Protein–RNA interactions for Protein: P47061

VPS53, Vacuolar protein sorting-associated protein 53, yeastyeast

Predictions only

Length 822 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS53P47061 tD(GUC)QtD(GUC)Q 75 nt1.27□□□□□ -2.21
VPS53P47061 YGR240C-AYGR240C-A 201 nt1.26□□□□□ -2.21
VPS53P47061 YBL100W-CYBL100W-C 120 nt1.26□□□□□ -2.21
VPS53P47061 NST1YNL091W 3723 nt1.26□□□□□ -2.21
VPS53P47061 CSE1YGL238W 2883 nt1.25□□□□□ -2.21
VPS53P47061 YLL006W-AYLL006W-A 177 nt1.25□□□□□ -2.21
VPS53P47061 snR69snR69 101 nt1.24□□□□□ -2.21
VPS53P47061 RKR1YMR247C 4689 nt1.24□□□□□ -2.21
VPS53P47061 ORC3YLL004W 1851 nt1.19□□□□□ -2.22
VPS53P47061 snR47snR47 99 nt1.19□□□□□ -2.22
VPS53P47061 NIP1YMR309C 2439 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)BtF(GAA)B 73 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)FtF(GAA)F 73 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)GtF(GAA)G 73 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)H1tF(GAA)H1 73 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)H2tF(GAA)H2 73 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)MtF(GAA)M 73 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)P1tF(GAA)P1 73 nt1.18□□□□□ -2.22
VPS53P47061 tF(GAA)P2tF(GAA)P2 73 nt1.18□□□□□ -2.22
VPS53P47061 YLR299C-AYLR299C-A 93 nt1.17□□□□□ -2.22
VPS53P47061 BEM2YER155C 6504 nt1.16□□□□□ -2.22
VPS53P47061 VAM6YDL077C 3150 nt1.16□□□□□ -2.22
VPS53P47061 BUL2YML111W 2763 nt1.16□□□□□ -2.22
VPS53P47061 YDL159C-BYDL159C-B 177 nt1.15□□□□□ -2.23
VPS53P47061 SCC2YDR180W 4482 nt1.15□□□□□ -2.23
VPS53P47061 YJR029WYJR029W 5268 nt1.15□□□□□ -2.23
VPS53P47061 YPR137C-BYPR137C-B 5268 nt1.15□□□□□ -2.23
VPS53P47061 RDS3YPR094W 324 nt1.14□□□□□ -2.23
VPS53P47061 UTP20YBL004W 7482 nt1.14□□□□□ -2.23
VPS53P47061 YPR117WYPR117W 7470 nt1.13□□□□□ -2.23
VPS53P47061 YOR192C-BYOR192C-B 5313 nt1.12□□□□□ -2.23
VPS53P47061 DOP1YDR141C 5097 nt1.11□□□□□ -2.23
VPS53P47061 YJL077W-AYJL077W-A 87 nt1.08□□□□□ -2.24
VPS53P47061 YNL054W-BYNL054W-B 5250 nt1.06□□□□□ -2.24
VPS53P47061 EMT1tM(CAU)D 73 nt1.03□□□□□ -2.24
VPS53P47061 EMT5tM(CAU)J1 73 nt1.03□□□□□ -2.24
VPS53P47061 EMT3tM(CAU)J2 73 nt1.03□□□□□ -2.24
VPS53P47061 EMT4tM(CAU)M 73 nt1.03□□□□□ -2.24
VPS53P47061 EMT2tM(CAU)O2 73 nt1.03□□□□□ -2.24
VPS53P47061 YML054C-AYML054C-A 159 nt1.02□□□□□ -2.25
VPS53P47061 YDR371C-AYDR371C-A 105 nt1□□□□□ -2.25
VPS53P47061 tQ(UUG)QtQ(UUG)Q 76 nt1□□□□□ -2.25
VPS53P47061 YOL014WYOL014W 375 nt0.98□□□□□ -2.25
VPS53P47061 snR64snR64 101 nt0.97□□□□□ -2.25
VPS53P47061 YHR180C-BYHR180C-B 105 nt0.97□□□□□ -2.25
VPS53P47061 YMR160WYMR160W 2451 nt0.97□□□□□ -2.25
VPS53P47061 YBR109W-AYBR109W-A 225 nt0.96□□□□□ -2.26
VPS53P47061 PET111YMR257C 2403 nt0.95□□□□□ -2.26
VPS53P47061 snR53snR53 91 nt0.95□□□□□ -2.26
VPS53P47061 YKL225WYKL225W 348 nt0.93□□□□□ -2.26
VPS53P47061 snR50snR50 90 nt0.91□□□□□ -2.26
VPS53P47061 YER090C-AYER090C-A 90 nt0.9□□□□□ -2.27
VPS53P47061 LTE1YAL024C 4308 nt0.89□□□□□ -2.27
VPS53P47061 RPL41AYDL184C 78 nt0.89□□□□□ -2.27
VPS53P47061 snR38snR38 95 nt0.89□□□□□ -2.27
VPS53P47061 YKL145W-AYKL145W-A 93 nt0.88□□□□□ -2.27
VPS53P47061 YBR296C-AYBR296C-A 120 nt0.87□□□□□ -2.27
VPS53P47061 YBL100W-BYBL100W-B 5313 nt0.84□□□□□ -2.27
VPS53P47061 tT(AGU)BtT(AGU)B 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)CtT(AGU)C 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)DtT(AGU)D 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)HtT(AGU)H 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)I1tT(AGU)I1 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)I2tT(AGU)I2 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)JtT(AGU)J 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)N1tT(AGU)N1 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)N2tT(AGU)N2 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)O1tT(AGU)O1 73 nt0.8□□□□□ -2.28
VPS53P47061 tT(AGU)O2tT(AGU)O2 73 nt0.8□□□□□ -2.28
VPS53P47061 AI1Q0050 2505 nt0.8□□□□□ -2.28
VPS53P47061 YPR159C-AYPR159C-A 102 nt0.74□□□□□ -2.29
VPS53P47061 MLP1YKR095W 5628 nt0.7□□□□□ -2.3
VPS53P47061 snR67snR67 82 nt0.7□□□□□ -2.3
VPS53P47061 YMR272W-AYMR272W-A 114 nt0.69□□□□□ -2.3
VPS53P47061 YDL159W-AYDL159W-A 132 nt0.68□□□□□ -2.3
VPS53P47061 UTP10YJL109C 5310 nt0.67□□□□□ -2.3
VPS53P47061 SKI7YOR076C 2244 nt0.65□□□□□ -2.31
VPS53P47061 IQG1YPL242C 4488 nt0.64□□□□□ -2.31
VPS53P47061 FMP27YLR454W 7887 nt0.61□□□□□ -2.31
VPS53P47061 YOR186C-AYOR186C-A 210 nt0.61□□□□□ -2.31
VPS53P47061 MLP2YIL149C 5040 nt0.56□□□□□ -2.32
VPS53P47061 YGR122C-AYGR122C-A 129 nt0.54□□□□□ -2.32
VPS53P47061 YLR149C-AYLR149C-A 87 nt0.54□□□□□ -2.32
VPS53P47061 YML100W-AYML100W-A 174 nt0.51□□□□□ -2.33
VPS53P47061 SOV1YMR066W 2697 nt0.51□□□□□ -2.33
VPS53P47061 THO2YNL139C 4794 nt0.5□□□□□ -2.33
VPS53P47061 YER078W-AYER078W-A 165 nt0.47□□□□□ -2.33
VPS53P47061 ESP1YGR098C 4893 nt0.43□□□□□ -2.34
VPS53P47061 YKL106C-AYKL106C-A 120 nt0.39□□□□□ -2.35
VPS53P47061 YKL096C-BYKL096C-B 150 nt0.35□□□□□ -2.35
VPS53P47061 YOL013W-AYOL013W-A 192 nt0.34□□□□□ -2.36
VPS53P47061 snR128snR128 126 nt0.32□□□□□ -2.36
VPS53P47061 YOR376W-AYOR376W-A 156 nt0.26□□□□□ -2.37
VPS53P47061 YDL114W-AYDL114W-A 114 nt0.22□□□□□ -2.37
VPS53P47061 PAU9YBL108C-A 129 nt0.2□□□□□ -2.38
VPS53P47061 tV(UAC)QtV(UAC)Q 76 nt0.18□□□□□ -2.38
VPS53P47061 YOR316C-AYOR316C-A 210 nt0.13□□□□□ -2.39
VPS53P47061 snR75snR75 89 nt0.06□□□□□ -2.4
VPS53P47061 tA(UGC)QtA(UGC)Q 76 nt0.06□□□□□ -2.4
VPS53P47061 snR77snR77 88 nt0.03□□□□□ -2.4
Retrieved 100 of 7,029 protein–RNA pairs in 16.1 ms