Protein–RNA interactions for Protein: P46669

RPA43, DNA-directed RNA polymerase I subunit RPA43, yeastyeast

Predictions only

Length 326 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPA43P46669 tA(UGC)QtA(UGC)Q 76 nt-0.68□□□□□ -2.52
RPA43P46669 tT(UGU)G1tT(UGU)G1 72 nt-0.69□□□□□ -2.52
RPA43P46669 tT(UGU)G2tT(UGU)G2 72 nt-0.69□□□□□ -2.52
RPA43P46669 tT(UGU)PtT(UGU)P 72 nt-0.69□□□□□ -2.52
RPA43P46669 snR69snR69 101 nt-0.7□□□□□ -2.52
RPA43P46669 snR39BsnR39B 96 nt-0.71□□□□□ -2.52
RPA43P46669 YOL155W-AYOL155W-A 135 nt-0.72□□□□□ -2.52
RPA43P46669 YOR170WYOR170W 306 nt-0.72□□□□□ -2.52
RPA43P46669 snR56snR56 88 nt-0.74□□□□□ -2.53
RPA43P46669 snR65snR65 100 nt-0.75□□□□□ -2.53
RPA43P46669 YGR146C-AYGR146C-A 162 nt-0.76□□□□□ -2.53
RPA43P46669 tR(ACG)Q2tR(ACG)Q2 74 nt-0.76□□□□□ -2.53
RPA43P46669 RDS3YPR094W 324 nt-0.78□□□□□ -2.53
RPA43P46669 PMP2YEL017C-A 132 nt-0.8□□□□□ -2.54
RPA43P46669 YER090C-AYER090C-A 90 nt-0.8□□□□□ -2.54
RPA43P46669 YOR329W-AYOR329W-A 210 nt-0.8□□□□□ -2.54
RPA43P46669 snR33snR33 183 nt-0.8□□□□□ -2.54
RPA43P46669 snR161snR161 161 nt-0.81□□□□□ -2.54
RPA43P46669 YPL152W-AYPL152W-A 99 nt-0.81□□□□□ -2.54
RPA43P46669 snR50snR50 90 nt-0.81□□□□□ -2.54
RPA43P46669 YNL097C-BYNL097C-B 123 nt-0.83□□□□□ -2.54
RPA43P46669 YNL266WYNL266W 420 nt-0.84□□□□□ -2.54
RPA43P46669 YOR302WYOR302W 78 nt-0.85□□□□□ -2.55
RPA43P46669 YPL060C-AYPL060C-A 3315 nt-0.85□□□□□ -2.55
RPA43P46669 YHL009W-BYHL009W-B 5409 nt-0.87□□□□□ -2.55
RPA43P46669 YGL188C-AYGL188C-A 141 nt-0.87□□□□□ -2.55
RPA43P46669 snR52snR52 92 nt-0.9□□□□□ -2.55
RPA43P46669 tD(GUC)QtD(GUC)Q 75 nt-0.91□□□□□ -2.56
RPA43P46669 YLR342W-AYLR342W-A 174 nt-0.93□□□□□ -2.56
RPA43P46669 JLP2YMR132C 627 nt-0.94□□□□□ -2.56
RPA43P46669 YDR524W-CYDR524W-C 90 nt-0.95□□□□□ -2.56
RPA43P46669 YLR286W-AYLR286W-A 135 nt-0.95□□□□□ -2.56
RPA43P46669 YNR077CYNR077C 255 nt-0.96□□□□□ -2.56
RPA43P46669 YBR178WYBR178W 375 nt-0.96□□□□□ -2.56
RPA43P46669 snR67snR67 82 nt-0.97□□□□□ -2.56
RPA43P46669 YNL205CYNL205C 423 nt-0.97□□□□□ -2.56
RPA43P46669 YOR231C-AYOR231C-A 201 nt-0.99□□□□□ -2.57
RPA43P46669 snR48snR48 113 nt-0.99□□□□□ -2.57
RPA43P46669 YOR102WYOR102W 351 nt-1□□□□□ -2.57
RPA43P46669 YBR223W-AYBR223W-A 120 nt-1□□□□□ -2.57
RPA43P46669 YDL159C-BYDL159C-B 177 nt-1.01□□□□□ -2.57
RPA43P46669 YHL015W-AYHL015W-A 84 nt-1.04□□□□□ -2.58
RPA43P46669 snR80snR80 171 nt-1.05□□□□□ -2.58
RPA43P46669 tL(UAA)QtL(UAA)Q 85 nt-1.05□□□□□ -2.58
RPA43P46669 SKI7YOR076C 2244 nt-1.13□□□□□ -2.59
RPA43P46669 YDR406W-AYDR406W-A 246 nt-1.15□□□□□ -2.59
RPA43P46669 YLR299C-AYLR299C-A 93 nt-1.17□□□□□ -2.6
RPA43P46669 YBR196C-AYBR196C-A 150 nt-1.18□□□□□ -2.6
RPA43P46669 tP(UGG)QtP(UGG)Q 72 nt-1.26□□□□□ -2.61
RPA43P46669 YML054C-AYML054C-A 159 nt-1.27□□□□□ -2.61
RPA43P46669 YNL198CYNL198C 303 nt-1.28□□□□□ -2.61
RPA43P46669 SOM1YEL059C-A 225 nt-1.37□□□□□ -2.63
RPA43P46669 YHR180C-BYHR180C-B 105 nt-1.39□□□□□ -2.63
RPA43P46669 YJL150WYJL150W 303 nt-1.4□□□□□ -2.63
RPA43P46669 YBL053WYBL053W 375 nt-1.42□□□□□ -2.64
RPA43P46669 YGR240C-AYGR240C-A 201 nt-1.47□□□□□ -2.64
RPA43P46669 YCR095W-AYCR095W-A 159 nt-1.48□□□□□ -2.65
RPA43P46669 YMR046W-AYMR046W-A 129 nt-1.48□□□□□ -2.65
RPA43P46669 CDC65tQ(CUG)M 72 nt-1.52□□□□□ -2.65
RPA43P46669 tY(GUA)QtY(GUA)Q 84 nt-1.52□□□□□ -2.65
RPA43P46669 YOR376W-AYOR376W-A 156 nt-1.53□□□□□ -2.65
RPA43P46669 Q0142Q0142 177 nt-1.54□□□□□ -2.66
RPA43P46669 snR77snR77 88 nt-1.55□□□□□ -2.66
RPA43P46669 SPG3YDR504C 384 nt-1.58□□□□□ -2.66
RPA43P46669 YKL106C-AYKL106C-A 120 nt-1.63□□□□□ -2.67
RPA43P46669 YMR315W-AYMR315W-A 108 nt-1.64□□□□□ -2.67
RPA43P46669 snR81snR81 201 nt-1.67□□□□□ -2.68
RPA43P46669 RPL41AYDL184C 78 nt-1.68□□□□□ -2.68
RPA43P46669 YGR151CYGR151C 336 nt-1.69□□□□□ -2.68
RPA43P46669 YOR316C-AYOR316C-A 210 nt-1.7□□□□□ -2.68
RPA43P46669 YBR296C-AYBR296C-A 120 nt-1.7□□□□□ -2.68
RPA43P46669 tM(CAU)Q1tM(CAU)Q1 76 nt-1.71□□□□□ -2.68
RPA43P46669 YOL083C-AYOL083C-A 141 nt-1.71□□□□□ -2.68
RPA43P46669 YBR109W-AYBR109W-A 225 nt-1.76□□□□□ -2.69
RPA43P46669 YLR466C-BYLR466C-B 117 nt-1.8□□□□□ -2.7
RPA43P46669 YCL001W-BYCL001W-B 255 nt-1.8□□□□□ -2.7
RPA43P46669 YBL071C-BYBL071C-B 99 nt-1.81□□□□□ -2.7
RPA43P46669 YOL164W-AYOL164W-A 183 nt-1.84□□□□□ -2.7
RPA43P46669 YNL338WYNL338W 159 nt-1.87□□□□□ -2.71
RPA43P46669 YBR126W-BYBR126W-B 144 nt-1.87□□□□□ -2.71
RPA43P46669 YAL037C-AYAL037C-A 93 nt-1.91□□□□□ -2.72
RPA43P46669 YBL100W-CYBL100W-C 120 nt-1.91□□□□□ -2.72
RPA43P46669 snR38snR38 95 nt-1.91□□□□□ -2.72
RPA43P46669 snR47snR47 99 nt-1.91□□□□□ -2.72
RPA43P46669 YOR309CYOR309C 381 nt-2.04□□□□□ -2.74
RPA43P46669 YNL337WYNL337W 255 nt-2.06□□□□□ -2.74
RPA43P46669 tS(GCU)Q1tS(GCU)Q1 86 nt-2.19□□□□□ -2.76
RPA43P46669 YKL225WYKL225W 348 nt-2.2□□□□□ -2.76
RPA43P46669 snR6snR6 112 nt-2.28□□□□□ -2.77
RPA43P46669 YDR543CYDR543C 300 nt-2.28□□□□□ -2.77
RPA43P46669 Q0032Q0032 291 nt-2.29□□□□□ -2.78
RPA43P46669 RPL41BYDL133C-A 78 nt-2.29□□□□□ -2.78
RPA43P46669 YGL041C-BYGL041C-B 183 nt-2.31□□□□□ -2.78
RPA43P46669 YDL114W-AYDL114W-A 114 nt-2.33□□□□□ -2.78
RPA43P46669 YOR335W-AYOR335W-A 81 nt-2.34□□□□□ -2.78
RPA43P46669 YNL103W-AYNL103W-A 90 nt-2.39□□□□□ -2.79
RPA43P46669 YDR034C-AYDR034C-A 177 nt-2.4□□□□□ -2.79
RPA43P46669 YOL166W-AYOL166W-A 156 nt-2.4□□□□□ -2.79
RPA43P46669 snR61snR61 90 nt-2.41□□□□□ -2.8
RPA43P46669 YGL007C-AYGL007C-A 87 nt-2.41□□□□□ -2.8
Retrieved 100 of 7,029 protein–RNA pairs in 8.8 ms