Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 RPL39YJL189W 156 nt-1.06□□□□□ -2.58
CUP9P41817 PMP2YEL017C-A 132 nt-1.07□□□□□ -2.58
CUP9P41817 YGR146C-AYGR146C-A 162 nt-1.07□□□□□ -2.58
CUP9P41817 tF(GAA)QtF(GAA)Q 75 nt-1.09□□□□□ -2.58
CUP9P41817 YEL014CYEL014C 306 nt-1.09□□□□□ -2.58
CUP9P41817 snR39BsnR39B 96 nt-1.09□□□□□ -2.58
CUP9P41817 JLP2YMR132C 627 nt-1.11□□□□□ -2.59
CUP9P41817 YDL240C-AYDL240C-A 138 nt-1.12□□□□□ -2.59
CUP9P41817 YER181CYER181C 324 nt-1.12□□□□□ -2.59
CUP9P41817 YDR413CYDR413C 576 nt-1.13□□□□□ -2.59
CUP9P41817 YFL019CYFL019C 354 nt-1.13□□□□□ -2.59
CUP9P41817 VAR1Q0140 1197 nt-1.14□□□□□ -2.59
CUP9P41817 tP(UGG)QtP(UGG)Q 72 nt-1.14□□□□□ -2.59
CUP9P41817 YBR131C-AYBR131C-A 90 nt-1.15□□□□□ -2.59
CUP9P41817 snR67snR67 82 nt-1.16□□□□□ -2.6
CUP9P41817 YNL277W-AYNL277W-A 189 nt-1.16□□□□□ -2.6
CUP9P41817 YKL118WYKL118W 312 nt-1.17□□□□□ -2.6
CUP9P41817 YOR329W-AYOR329W-A 210 nt-1.2□□□□□ -2.6
CUP9P41817 tD(GUC)QtD(GUC)Q 75 nt-1.21□□□□□ -2.6
CUP9P41817 snR55snR55 98 nt-1.22□□□□□ -2.6
CUP9P41817 YLR286W-AYLR286W-A 135 nt-1.23□□□□□ -2.61
CUP9P41817 YPR012WYPR012W 255 nt-1.23□□□□□ -2.61
CUP9P41817 GIM4YEL003W 336 nt-1.24□□□□□ -2.61
CUP9P41817 SKI7YOR076C 2244 nt-1.25□□□□□ -2.61
CUP9P41817 YNL097C-BYNL097C-B 123 nt-1.26□□□□□ -2.61
CUP9P41817 YNL205CYNL205C 423 nt-1.29□□□□□ -2.62
CUP9P41817 YBR178WYBR178W 375 nt-1.29□□□□□ -2.62
CUP9P41817 YDL159C-BYDL159C-B 177 nt-1.3□□□□□ -2.62
CUP9P41817 YML054C-AYML054C-A 159 nt-1.36□□□□□ -2.63
CUP9P41817 YOL155W-AYOL155W-A 135 nt-1.36□□□□□ -2.63
CUP9P41817 snR48snR48 113 nt-1.37□□□□□ -2.63
CUP9P41817 YOR102WYOR102W 351 nt-1.41□□□□□ -2.64
CUP9P41817 YOR302WYOR302W 78 nt-1.42□□□□□ -2.64
CUP9P41817 YGL188C-AYGL188C-A 141 nt-1.44□□□□□ -2.64
CUP9P41817 CDC65tQ(CUG)M 72 nt-1.45□□□□□ -2.64
CUP9P41817 YGR240C-AYGR240C-A 201 nt-1.45□□□□□ -2.64
CUP9P41817 YLR299C-AYLR299C-A 93 nt-1.45□□□□□ -2.64
CUP9P41817 tL(UAA)QtL(UAA)Q 85 nt-1.46□□□□□ -2.64
CUP9P41817 Q0144Q0144 330 nt-1.46□□□□□ -2.64
CUP9P41817 tY(GUA)QtY(GUA)Q 84 nt-1.47□□□□□ -2.64
CUP9P41817 YPL152W-AYPL152W-A 99 nt-1.47□□□□□ -2.64
CUP9P41817 snR65snR65 100 nt-1.48□□□□□ -2.65
CUP9P41817 snR77snR77 88 nt-1.48□□□□□ -2.65
CUP9P41817 YLR342W-AYLR342W-A 174 nt-1.5□□□□□ -2.65
CUP9P41817 YBR196C-AYBR196C-A 150 nt-1.51□□□□□ -2.65
CUP9P41817 snR52snR52 92 nt-1.51□□□□□ -2.65
CUP9P41817 YHL015W-AYHL015W-A 84 nt-1.54□□□□□ -2.66
CUP9P41817 snR81snR81 201 nt-1.62□□□□□ -2.67
CUP9P41817 YMR315W-AYMR315W-A 108 nt-1.63□□□□□ -2.67
CUP9P41817 YOR376W-AYOR376W-A 156 nt-1.66□□□□□ -2.68
CUP9P41817 YHR175W-AYHR175W-A 150 nt-1.69□□□□□ -2.68
CUP9P41817 YHR180C-BYHR180C-B 105 nt-1.69□□□□□ -2.68
CUP9P41817 YNL198CYNL198C 303 nt-1.72□□□□□ -2.68
CUP9P41817 snR80snR80 171 nt-1.75□□□□□ -2.69
CUP9P41817 YJL150WYJL150W 303 nt-1.77□□□□□ -2.69
CUP9P41817 YOR231C-AYOR231C-A 201 nt-1.77□□□□□ -2.69
CUP9P41817 tR(ACG)Q2tR(ACG)Q2 74 nt-1.79□□□□□ -2.7
CUP9P41817 YOR316C-AYOR316C-A 210 nt-1.79□□□□□ -2.7
CUP9P41817 SOM1YEL059C-A 225 nt-1.82□□□□□ -2.7
CUP9P41817 YKL106C-AYKL106C-A 120 nt-1.82□□□□□ -2.7
CUP9P41817 snR56snR56 88 nt-1.83□□□□□ -2.7
CUP9P41817 YDR406W-AYDR406W-A 246 nt-1.84□□□□□ -2.7
CUP9P41817 YOR309CYOR309C 381 nt-1.88□□□□□ -2.71
CUP9P41817 YCR095W-AYCR095W-A 159 nt-1.91□□□□□ -2.72
CUP9P41817 YBR126W-BYBR126W-B 144 nt-1.92□□□□□ -2.72
CUP9P41817 YBR296C-AYBR296C-A 120 nt-1.95□□□□□ -2.72
CUP9P41817 YBR109W-AYBR109W-A 225 nt-1.96□□□□□ -2.72
CUP9P41817 YBL053WYBL053W 375 nt-1.97□□□□□ -2.72
CUP9P41817 RPL41AYDL184C 78 nt-1.98□□□□□ -2.73
CUP9P41817 YDR524W-CYDR524W-C 90 nt-1.99□□□□□ -2.73
CUP9P41817 YGR151CYGR151C 336 nt-2.1□□□□□ -2.75
CUP9P41817 YOL083C-AYOL083C-A 141 nt-2.11□□□□□ -2.75
CUP9P41817 snR38snR38 95 nt-2.13□□□□□ -2.75
CUP9P41817 YBL071C-BYBL071C-B 99 nt-2.15□□□□□ -2.75
CUP9P41817 YMR046W-AYMR046W-A 129 nt-2.18□□□□□ -2.76
CUP9P41817 YOL164W-AYOL164W-A 183 nt-2.19□□□□□ -2.76
CUP9P41817 snR6snR6 112 nt-2.22□□□□□ -2.76
CUP9P41817 YDR543CYDR543C 300 nt-2.22□□□□□ -2.76
CUP9P41817 YOL166W-AYOL166W-A 156 nt-2.26□□□□□ -2.77
CUP9P41817 YAL037C-AYAL037C-A 93 nt-2.27□□□□□ -2.77
CUP9P41817 snR47snR47 99 nt-2.28□□□□□ -2.77
CUP9P41817 YBL100W-CYBL100W-C 120 nt-2.29□□□□□ -2.78
CUP9P41817 YOR335W-AYOR335W-A 81 nt-2.33□□□□□ -2.78
CUP9P41817 YCL001W-BYCL001W-B 255 nt-2.33□□□□□ -2.78
CUP9P41817 SPG3YDR504C 384 nt-2.34□□□□□ -2.78
CUP9P41817 snR73snR73 106 nt-2.37□□□□□ -2.79
CUP9P41817 RPL41BYDL133C-A 78 nt-2.37□□□□□ -2.79
CUP9P41817 tM(CAU)Q1tM(CAU)Q1 76 nt-2.45□□□□□ -2.8
CUP9P41817 Q0142Q0142 177 nt-2.47□□□□□ -2.8
CUP9P41817 YKL225WYKL225W 348 nt-2.5□□□□□ -2.81
CUP9P41817 YDL114W-AYDL114W-A 114 nt-2.51□□□□□ -2.81
CUP9P41817 YLR466C-BYLR466C-B 117 nt-2.51□□□□□ -2.81
CUP9P41817 YNL337WYNL337W 255 nt-2.54□□□□□ -2.82
CUP9P41817 tS(GCU)Q1tS(GCU)Q1 86 nt-2.55□□□□□ -2.82
CUP9P41817 tV(UAC)QtV(UAC)Q 76 nt-2.55□□□□□ -2.82
CUP9P41817 snR85snR85 171 nt-2.6□□□□□ -2.83
CUP9P41817 YNL338WYNL338W 159 nt-2.61□□□□□ -2.83
CUP9P41817 YDR524C-AYDR524C-A 120 nt-2.77□□□□□ -2.85
CUP9P41817 YDR034C-AYDR034C-A 177 nt-2.79□□□□□ -2.86
CUP9P41817 YGL041C-BYGL041C-B 183 nt-2.79□□□□□ -2.86
Retrieved 100 of 7,029 protein–RNA pairs in 25 ms