Protein–RNA interactions for Protein: P40343

VPS27, Vacuolar protein sorting-associated protein 27, yeastyeast

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS27P40343 Q0032Q0032 291 nt0.43□□□□□ -2.34
VPS27P40343 snR39BsnR39B 96 nt0.43□□□□□ -2.34
VPS27P40343 YDL007C-AYDL007C-A 258 nt0.42□□□□□ -2.34
VPS27P40343 YDR210WYDR210W 228 nt0.42□□□□□ -2.34
VPS27P40343 tM(CAU)Q2tM(CAU)Q2 78 nt0.42□□□□□ -2.34
VPS27P40343 BIR1YJR089W 2865 nt0.42□□□□□ -2.34
VPS27P40343 YGL007C-AYGL007C-A 87 nt0.41□□□□□ -2.34
VPS27P40343 YNL054W-BYNL054W-B 5250 nt0.41□□□□□ -2.34
VPS27P40343 YKL145W-AYKL145W-A 93 nt0.39□□□□□ -2.35
VPS27P40343 QCR9YGR183C 201 nt0.38□□□□□ -2.35
VPS27P40343 YGR146C-AYGR146C-A 162 nt0.37□□□□□ -2.35
VPS27P40343 YBL053WYBL053W 375 nt0.37□□□□□ -2.35
VPS27P40343 CSE1YGL238W 2883 nt0.36□□□□□ -2.35
VPS27P40343 YOR186C-AYOR186C-A 210 nt0.36□□□□□ -2.35
VPS27P40343 YBR099CYBR099C 384 nt0.36□□□□□ -2.35
VPS27P40343 AI1Q0050 2505 nt0.33□□□□□ -2.36
VPS27P40343 YOL013W-AYOL013W-A 192 nt0.32□□□□□ -2.36
VPS27P40343 YOR225WYOR225W 330 nt0.31□□□□□ -2.36
VPS27P40343 YNL338WYNL338W 159 nt0.3□□□□□ -2.36
VPS27P40343 SOV1YMR066W 2697 nt0.3□□□□□ -2.36
VPS27P40343 YNL067W-BYNL067W-B 141 nt0.29□□□□□ -2.36
VPS27P40343 YOL014WYOL014W 375 nt0.24□□□□□ -2.37
VPS27P40343 EST1YLR233C 2100 nt0.22□□□□□ -2.37
VPS27P40343 THO2YNL139C 4794 nt0.21□□□□□ -2.38
VPS27P40343 YJL077W-AYJL077W-A 87 nt0.2□□□□□ -2.38
VPS27P40343 YNL205CYNL205C 423 nt0.19□□□□□ -2.38
VPS27P40343 snR69snR69 101 nt0.17□□□□□ -2.38
VPS27P40343 PMP2YEL017C-A 132 nt0.17□□□□□ -2.38
VPS27P40343 YLR294CYLR294C 330 nt0.13□□□□□ -2.39
VPS27P40343 SEC10YLR166C 2616 nt0.07□□□□□ -2.4
VPS27P40343 YIL071W-AYIL071W-A 477 nt0.07□□□□□ -2.4
VPS27P40343 YGR164WYGR164W 336 nt0.06□□□□□ -2.4
VPS27P40343 YCR095W-AYCR095W-A 159 nt0.05□□□□□ -2.4
VPS27P40343 RDS3YPR094W 324 nt0.05□□□□□ -2.4
VPS27P40343 SOM1YEL059C-A 225 nt0.04□□□□□ -2.4
VPS27P40343 YER078W-AYER078W-A 165 nt0.02□□□□□ -2.41
VPS27P40343 tD(GUC)QtD(GUC)Q 75 nt0.01□□□□□ -2.41
VPS27P40343 YNL266WYNL266W 420 nt0□□□□□ -2.41
VPS27P40343 snR128snR128 126 nt-0.01□□□□□ -2.41
VPS27P40343 YBR178WYBR178W 375 nt-0.01□□□□□ -2.41
VPS27P40343 tQ(UUG)QtQ(UUG)Q 76 nt-0.02□□□□□ -2.41
VPS27P40343 snR50snR50 90 nt-0.03□□□□□ -2.41
VPS27P40343 YCL001W-BYCL001W-B 255 nt-0.05□□□□□ -2.42
VPS27P40343 YER090C-AYER090C-A 90 nt-0.06□□□□□ -2.42
VPS27P40343 YML100W-AYML100W-A 174 nt-0.09□□□□□ -2.42
VPS27P40343 snR45snR45 172 nt-0.09□□□□□ -2.42
VPS27P40343 YLR286W-AYLR286W-A 135 nt-0.11□□□□□ -2.43
VPS27P40343 YBR196C-AYBR196C-A 150 nt-0.11□□□□□ -2.43
VPS27P40343 YDL159C-BYDL159C-B 177 nt-0.14□□□□□ -2.43
VPS27P40343 SBH2YER019C-A 267 nt-0.16□□□□□ -2.44
VPS27P40343 TFB5YDR079C-A 219 nt-0.19□□□□□ -2.44
VPS27P40343 YLR299C-AYLR299C-A 93 nt-0.21□□□□□ -2.44
VPS27P40343 YML054C-AYML054C-A 159 nt-0.25□□□□□ -2.45
VPS27P40343 PAU9YBL108C-A 129 nt-0.25□□□□□ -2.45
VPS27P40343 SKI7YOR076C 2244 nt-0.25□□□□□ -2.45
VPS27P40343 YJL113WYJL113W 4647 nt-0.26□□□□□ -2.45
VPS27P40343 YNL170WYNL170W 396 nt-0.26□□□□□ -2.45
VPS27P40343 snR67snR67 82 nt-0.27□□□□□ -2.45
VPS27P40343 tA(UGC)QtA(UGC)Q 76 nt-0.28□□□□□ -2.45
VPS27P40343 YBL071C-BYBL071C-B 99 nt-0.29□□□□□ -2.46
VPS27P40343 YOL083C-AYOL083C-A 141 nt-0.29□□□□□ -2.46
VPS27P40343 ATP8Q0080 147 nt-0.3□□□□□ -2.46
VPS27P40343 snR81snR81 201 nt-0.34□□□□□ -2.46
VPS27P40343 YNL103W-AYNL103W-A 90 nt-0.35□□□□□ -2.47
VPS27P40343 YHR180C-BYHR180C-B 105 nt-0.4□□□□□ -2.47
VPS27P40343 YAL037C-AYAL037C-A 93 nt-0.41□□□□□ -2.48
VPS27P40343 YOL164W-AYOL164W-A 183 nt-0.42□□□□□ -2.48
VPS27P40343 YBR109W-AYBR109W-A 225 nt-0.43□□□□□ -2.48
VPS27P40343 tT(UGU)G1tT(UGU)G1 72 nt-0.44□□□□□ -2.48
VPS27P40343 tT(UGU)G2tT(UGU)G2 72 nt-0.44□□□□□ -2.48
VPS27P40343 tT(UGU)PtT(UGU)P 72 nt-0.44□□□□□ -2.48
VPS27P40343 snR38snR38 95 nt-0.44□□□□□ -2.48
VPS27P40343 Q0092Q0092 141 nt-0.45□□□□□ -2.48
VPS27P40343 URB1YKL014C 5295 nt-0.45□□□□□ -2.48
VPS27P40343 YGL041C-BYGL041C-B 183 nt-0.46□□□□□ -2.48
VPS27P40343 snR47snR47 99 nt-0.48□□□□□ -2.49
VPS27P40343 snR33snR33 183 nt-0.49□□□□□ -2.49
VPS27P40343 snR161snR161 161 nt-0.5□□□□□ -2.49
VPS27P40343 snR61snR61 90 nt-0.51□□□□□ -2.49
VPS27P40343 tS(GCU)Q1tS(GCU)Q1 86 nt-0.52□□□□□ -2.49
VPS27P40343 YOR376W-AYOR376W-A 156 nt-0.52□□□□□ -2.49
VPS27P40343 YGR240C-AYGR240C-A 201 nt-0.53□□□□□ -2.49
VPS27P40343 RPL41AYDL184C 78 nt-0.55□□□□□ -2.5
VPS27P40343 YBR296C-AYBR296C-A 120 nt-0.55□□□□□ -2.5
VPS27P40343 YHL009W-BYHL009W-B 5409 nt-0.55□□□□□ -2.5
VPS27P40343 Q0143Q0143 153 nt-0.59□□□□□ -2.5
VPS27P40343 YBL100W-CYBL100W-C 120 nt-0.64□□□□□ -2.51
VPS27P40343 YKL106C-AYKL106C-A 120 nt-0.65□□□□□ -2.51
VPS27P40343 snR77snR77 88 nt-0.67□□□□□ -2.52
VPS27P40343 YDR034C-AYDR034C-A 177 nt-0.68□□□□□ -2.52
VPS27P40343 YKL225WYKL225W 348 nt-0.68□□□□□ -2.52
VPS27P40343 YBR223W-AYBR223W-A 120 nt-0.68□□□□□ -2.52
VPS27P40343 tP(UGG)QtP(UGG)Q 72 nt-0.7□□□□□ -2.52
VPS27P40343 snR62snR62 100 nt-0.71□□□□□ -2.52
VPS27P40343 YOR316C-AYOR316C-A 210 nt-0.75□□□□□ -2.53
VPS27P40343 YBL109WYBL109W 336 nt-0.76□□□□□ -2.53
VPS27P40343 CDC65tQ(CUG)M 72 nt-0.77□□□□□ -2.53
VPS27P40343 snR85snR85 171 nt-0.78□□□□□ -2.53
VPS27P40343 YHR217CYHR217C 462 nt-0.81□□□□□ -2.54
VPS27P40343 YDL159W-AYDL159W-A 132 nt-0.82□□□□□ -2.54
Retrieved 100 of 7,029 protein–RNA pairs in 7.6 ms