Protein–RNA interactions for Protein: P38789

SSF1, Ribosome biogenesis protein SSF1, yeastyeast

Predicted RBP Predictions only

Length 453 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSF1P38789 RPS26AYGL189C 360 nt1.03□□□□□ -2.24
SSF1P38789 YBR196C-AYBR196C-A 150 nt1.02□□□□□ -2.25
SSF1P38789 YDR371C-AYDR371C-A 105 nt1.01□□□□□ -2.25
SSF1P38789 YPL060C-AYPL060C-A 3315 nt0.99□□□□□ -2.25
SSF1P38789 YGL041C-BYGL041C-B 183 nt0.99□□□□□ -2.25
SSF1P38789 PAU12YGR294W 363 nt0.99□□□□□ -2.25
SSF1P38789 YJL077W-AYJL077W-A 87 nt0.99□□□□□ -2.25
SSF1P38789 SBH1YER087C-B 249 nt0.98□□□□□ -2.25
SSF1P38789 YBL109WYBL109W 336 nt0.97□□□□□ -2.25
SSF1P38789 EST1YLR233C 2100 nt0.97□□□□□ -2.25
SSF1P38789 YPR159C-AYPR159C-A 102 nt0.96□□□□□ -2.26
SSF1P38789 snR69snR69 101 nt0.95□□□□□ -2.26
SSF1P38789 tD(GUC)QtD(GUC)Q 75 nt0.95□□□□□ -2.26
SSF1P38789 YHR217CYHR217C 462 nt0.95□□□□□ -2.26
SSF1P38789 UTP20YBL004W 7482 nt0.93□□□□□ -2.26
SSF1P38789 IQG1YPL242C 4488 nt0.93□□□□□ -2.26
SSF1P38789 YAL037C-AYAL037C-A 93 nt0.91□□□□□ -2.26
SSF1P38789 RDS3YPR094W 324 nt0.89□□□□□ -2.27
SSF1P38789 MYO1YHR023W 5787 nt0.88□□□□□ -2.27
SSF1P38789 YMR160WYMR160W 2451 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)BtT(AGU)B 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)CtT(AGU)C 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)DtT(AGU)D 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)HtT(AGU)H 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)I1tT(AGU)I1 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)I2tT(AGU)I2 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)JtT(AGU)J 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)N1tT(AGU)N1 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)N2tT(AGU)N2 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)O1tT(AGU)O1 73 nt0.88□□□□□ -2.27
SSF1P38789 tT(AGU)O2tT(AGU)O2 73 nt0.88□□□□□ -2.27
SSF1P38789 ORC3YLL004W 1851 nt0.86□□□□□ -2.27
SSF1P38789 snR81snR81 201 nt0.84□□□□□ -2.27
SSF1P38789 YLR286W-AYLR286W-A 135 nt0.83□□□□□ -2.28
SSF1P38789 tQ(UUG)QtQ(UUG)Q 76 nt0.81□□□□□ -2.28
SSF1P38789 tF(GAA)BtF(GAA)B 73 nt0.8□□□□□ -2.28
SSF1P38789 tF(GAA)FtF(GAA)F 73 nt0.8□□□□□ -2.28
SSF1P38789 tF(GAA)GtF(GAA)G 73 nt0.8□□□□□ -2.28
SSF1P38789 tF(GAA)H1tF(GAA)H1 73 nt0.8□□□□□ -2.28
SSF1P38789 tF(GAA)H2tF(GAA)H2 73 nt0.8□□□□□ -2.28
SSF1P38789 tF(GAA)MtF(GAA)M 73 nt0.8□□□□□ -2.28
SSF1P38789 tF(GAA)P1tF(GAA)P1 73 nt0.8□□□□□ -2.28
SSF1P38789 tF(GAA)P2tF(GAA)P2 73 nt0.8□□□□□ -2.28
SSF1P38789 YDL159C-BYDL159C-B 177 nt0.79□□□□□ -2.28
SSF1P38789 YOL083C-AYOL083C-A 141 nt0.79□□□□□ -2.28
SSF1P38789 YBL100W-BYBL100W-B 5313 nt0.79□□□□□ -2.28
SSF1P38789 YLR299C-AYLR299C-A 93 nt0.76□□□□□ -2.29
SSF1P38789 YOR186C-AYOR186C-A 210 nt0.74□□□□□ -2.29
SSF1P38789 MLP2YIL149C 5040 nt0.73□□□□□ -2.29
SSF1P38789 YNL054W-BYNL054W-B 5250 nt0.73□□□□□ -2.29
SSF1P38789 YBL071C-BYBL071C-B 99 nt0.71□□□□□ -2.3
SSF1P38789 UTP10YJL109C 5310 nt0.71□□□□□ -2.3
SSF1P38789 YMR272W-AYMR272W-A 114 nt0.69□□□□□ -2.3
SSF1P38789 YDL247W-AYDL247W-A 75 nt0.68□□□□□ -2.3
SSF1P38789 YBL100W-CYBL100W-C 120 nt0.68□□□□□ -2.3
SSF1P38789 FMP27YLR454W 7887 nt0.66□□□□□ -2.3
SSF1P38789 YOL164W-AYOL164W-A 183 nt0.64□□□□□ -2.31
SSF1P38789 YER090C-AYER090C-A 90 nt0.63□□□□□ -2.31
SSF1P38789 tS(GCU)Q1tS(GCU)Q1 86 nt0.63□□□□□ -2.31
SSF1P38789 YKL145W-AYKL145W-A 93 nt0.62□□□□□ -2.31
SSF1P38789 YOL014WYOL014W 375 nt0.59□□□□□ -2.31
SSF1P38789 AI1Q0050 2505 nt0.57□□□□□ -2.32
SSF1P38789 snR62snR62 100 nt0.54□□□□□ -2.32
SSF1P38789 YGR240C-AYGR240C-A 201 nt0.52□□□□□ -2.33
SSF1P38789 snR50snR50 90 nt0.51□□□□□ -2.33
SSF1P38789 YHR180C-BYHR180C-B 105 nt0.5□□□□□ -2.33
SSF1P38789 YML054C-AYML054C-A 159 nt0.44□□□□□ -2.34
SSF1P38789 snR47snR47 99 nt0.44□□□□□ -2.34
SSF1P38789 YOL013W-AYOL013W-A 192 nt0.4□□□□□ -2.35
SSF1P38789 YDR034C-AYDR034C-A 177 nt0.39□□□□□ -2.35
SSF1P38789 YLL066W-BYLL066W-B 171 nt0.39□□□□□ -2.35
SSF1P38789 snR67snR67 82 nt0.38□□□□□ -2.35
SSF1P38789 SOV1YMR066W 2697 nt0.37□□□□□ -2.35
SSF1P38789 snR45snR45 172 nt0.35□□□□□ -2.35
SSF1P38789 ESP1YGR098C 4893 nt0.34□□□□□ -2.36
SSF1P38789 RPL41AYDL184C 78 nt0.31□□□□□ -2.36
SSF1P38789 snR128snR128 126 nt0.3□□□□□ -2.36
SSF1P38789 YBR296C-AYBR296C-A 120 nt0.28□□□□□ -2.36
SSF1P38789 THO2YNL139C 4794 nt0.27□□□□□ -2.37
SSF1P38789 YML100W-AYML100W-A 174 nt0.26□□□□□ -2.37
SSF1P38789 YBR109W-AYBR109W-A 225 nt0.26□□□□□ -2.37
SSF1P38789 YER078W-AYER078W-A 165 nt0.22□□□□□ -2.37
SSF1P38789 YKL225WYKL225W 348 nt0.11□□□□□ -2.39
SSF1P38789 snR38snR38 95 nt0.06□□□□□ -2.4
SSF1P38789 SKI7YOR076C 2244 nt0.01□□□□□ -2.41
SSF1P38789 PAU9YBL108C-A 129 nt-0.01□□□□□ -2.41
SSF1P38789 snR64snR64 101 nt-0.02□□□□□ -2.41
SSF1P38789 SBH2YER019C-A 267 nt-0.14□□□□□ -2.43
SSF1P38789 tA(UGC)QtA(UGC)Q 76 nt-0.18□□□□□ -2.44
SSF1P38789 YKL106C-AYKL106C-A 120 nt-0.18□□□□□ -2.44
SSF1P38789 snR53snR53 91 nt-0.21□□□□□ -2.44
SSF1P38789 YJL113WYJL113W 4647 nt-0.34□□□□□ -2.46
SSF1P38789 YOR376W-AYOR376W-A 156 nt-0.37□□□□□ -2.47
SSF1P38789 YDL159W-AYDL159W-A 132 nt-0.4□□□□□ -2.47
SSF1P38789 YGR122C-AYGR122C-A 129 nt-0.44□□□□□ -2.48
SSF1P38789 YOR316C-AYOR316C-A 210 nt-0.44□□□□□ -2.48
SSF1P38789 snR161snR161 161 nt-0.5□□□□□ -2.49
SSF1P38789 YHL009W-BYHL009W-B 5409 nt-0.59□□□□□ -2.5
SSF1P38789 YDL114W-AYDL114W-A 114 nt-0.62□□□□□ -2.51
SSF1P38789 URB1YKL014C 5295 nt-0.63□□□□□ -2.51
Retrieved 100 of 7,029 protein–RNA pairs in 12.9 ms