Protein–RNA interactions for Protein: P33400

RIM101, pH-response transcription factor pacC/RIM101, yeastyeast

Predictions only

Length 625 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RIM101P33400 CLU1YMR012W 3834 nt2.28□□□□□ -2.04
RIM101P33400 snR67snR67 82 nt2.25□□□□□ -2.05
RIM101P33400 LAA1YJL207C 6045 nt2.24□□□□□ -2.05
RIM101P33400 MLP2YIL149C 5040 nt2.24□□□□□ -2.05
RIM101P33400 CDC39YCR093W 6327 nt2.23□□□□□ -2.05
RIM101P33400 CFT1YDR301W 4074 nt2.2□□□□□ -2.06
RIM101P33400 NUP192YJL039C 5052 nt2.2□□□□□ -2.06
RIM101P33400 YGR130CYGR130C 2451 nt2.18□□□□□ -2.06
RIM101P33400 YKL106C-AYKL106C-A 120 nt2.15□□□□□ -2.07
RIM101P33400 YNL284C-BYNL284C-B 5268 nt2.13□□□□□ -2.07
RIM101P33400 tV(UAC)QtV(UAC)Q 76 nt2.1□□□□□ -2.07
RIM101P33400 FKS1YLR342W 5631 nt2.1□□□□□ -2.07
RIM101P33400 YMR247W-AYMR247W-A 144 nt2.08□□□□□ -2.08
RIM101P33400 snR40snR40 97 nt2.06□□□□□ -2.08
RIM101P33400 SPT7YBR081C 3999 nt2.05□□□□□ -2.08
RIM101P33400 YMR160WYMR160W 2451 nt2.03□□□□□ -2.08
RIM101P33400 YOR093CYOR093C 4947 nt2.03□□□□□ -2.08
RIM101P33400 SSK2YNR031C 4740 nt2.02□□□□□ -2.09
RIM101P33400 PEP1YBL017C 4740 nt2□□□□□ -2.09
RIM101P33400 DNF3YMR162C 4971 nt2□□□□□ -2.09
RIM101P33400 SPC110YDR356W 2835 nt2□□□□□ -2.09
RIM101P33400 YNL054W-BYNL054W-B 5250 nt1.99□□□□□ -2.09
RIM101P33400 FIG2YCR089W 4830 nt1.98□□□□□ -2.09
RIM101P33400 VAM6YDL077C 3150 nt1.96□□□□□ -2.1
RIM101P33400 VPS15YBR097W 4365 nt1.96□□□□□ -2.1
RIM101P33400 tT(UGU)HtT(UGU)H 72 nt1.95□□□□□ -2.1
RIM101P33400 FAB1YFR019W 6837 nt1.95□□□□□ -2.1
RIM101P33400 YOR192C-BYOR192C-B 5313 nt1.89□□□□□ -2.11
RIM101P33400 BRR2YER172C 6492 nt1.84□□□□□ -2.11
RIM101P33400 YPR117WYPR117W 7470 nt1.79□□□□□ -2.12
RIM101P33400 LTE1YAL024C 4308 nt1.77□□□□□ -2.13
RIM101P33400 RKR1YMR247C 4689 nt1.73□□□□□ -2.13
RIM101P33400 tQ(UUG)E2tQ(UUG)E2 72 nt1.72□□□□□ -2.13
RIM101P33400 YMR272W-BYMR272W-B 108 nt1.69□□□□□ -2.14
RIM101P33400 MEC1YBR136W 7107 nt1.66□□□□□ -2.14
RIM101P33400 snR77snR77 88 nt1.63□□□□□ -2.15
RIM101P33400 SCC2YDR180W 4482 nt1.63□□□□□ -2.15
RIM101P33400 MYO1YHR023W 5787 nt1.61□□□□□ -2.15
RIM101P33400 CCH1YGR217W 6120 nt1.6□□□□□ -2.15
RIM101P33400 YOR316C-AYOR316C-A 210 nt1.59□□□□□ -2.15
RIM101P33400 IRA1YBR140C 9279 nt1.58□□□□□ -2.16
RIM101P33400 PAU24YBR301W 363 nt1.56□□□□□ -2.16
RIM101P33400 YBL100W-BYBL100W-B 5313 nt1.53□□□□□ -2.16
RIM101P33400 BUD3YCL014W 4911 nt1.53□□□□□ -2.16
RIM101P33400 HKR1YDR420W 5409 nt1.51□□□□□ -2.17
RIM101P33400 SBH2YER019C-A 267 nt1.5□□□□□ -2.17
RIM101P33400 MLP1YKR095W 5628 nt1.46□□□□□ -2.18
RIM101P33400 YML100W-AYML100W-A 174 nt1.4□□□□□ -2.19
RIM101P33400 BEM2YER155C 6504 nt1.4□□□□□ -2.19
RIM101P33400 YJR029WYJR029W 5268 nt1.37□□□□□ -2.19
RIM101P33400 YOR186C-AYOR186C-A 210 nt1.35□□□□□ -2.19
RIM101P33400 IML1YJR138W 4755 nt1.34□□□□□ -2.19
RIM101P33400 DOP1YDR141C 5097 nt1.31□□□□□ -2.2
RIM101P33400 YPR137C-BYPR137C-B 5268 nt1.28□□□□□ -2.21
RIM101P33400 tH(GUG)E1tH(GUG)E1 72 nt1.25□□□□□ -2.21
RIM101P33400 tH(GUG)E2tH(GUG)E2 72 nt1.25□□□□□ -2.21
RIM101P33400 tH(GUG)G1tH(GUG)G1 72 nt1.25□□□□□ -2.21
RIM101P33400 tH(GUG)G2tH(GUG)G2 72 nt1.25□□□□□ -2.21
RIM101P33400 tH(GUG)HtH(GUG)H 72 nt1.25□□□□□ -2.21
RIM101P33400 tH(GUG)KtH(GUG)K 72 nt1.25□□□□□ -2.21
RIM101P33400 tH(GUG)MtH(GUG)M 72 nt1.25□□□□□ -2.21
RIM101P33400 tV(UAC)BtV(UAC)B 74 nt1.19□□□□□ -2.22
RIM101P33400 tV(UAC)DtV(UAC)D 74 nt1.19□□□□□ -2.22
RIM101P33400 SOV1YMR066W 2697 nt1.18□□□□□ -2.22
RIM101P33400 IQG1YPL242C 4488 nt1.09□□□□□ -2.23
RIM101P33400 EMT1tM(CAU)D 73 nt1.08□□□□□ -2.24
RIM101P33400 EMT5tM(CAU)J1 73 nt1.08□□□□□ -2.24
RIM101P33400 EMT3tM(CAU)J2 73 nt1.08□□□□□ -2.24
RIM101P33400 EMT4tM(CAU)M 73 nt1.08□□□□□ -2.24
RIM101P33400 EMT2tM(CAU)O2 73 nt1.08□□□□□ -2.24
RIM101P33400 THO2YNL139C 4794 nt1.07□□□□□ -2.24
RIM101P33400 PAU9YBL108C-A 129 nt1.06□□□□□ -2.24
RIM101P33400 ESP1YGR098C 4893 nt1.04□□□□□ -2.24
RIM101P33400 UTP20YBL004W 7482 nt1.01□□□□□ -2.25
RIM101P33400 YPR159C-AYPR159C-A 102 nt0.99□□□□□ -2.25
RIM101P33400 tF(GAA)BtF(GAA)B 73 nt0.95□□□□□ -2.26
RIM101P33400 tF(GAA)FtF(GAA)F 73 nt0.95□□□□□ -2.26
RIM101P33400 tF(GAA)GtF(GAA)G 73 nt0.95□□□□□ -2.26
RIM101P33400 tF(GAA)H1tF(GAA)H1 73 nt0.95□□□□□ -2.26
RIM101P33400 tF(GAA)H2tF(GAA)H2 73 nt0.95□□□□□ -2.26
RIM101P33400 tF(GAA)MtF(GAA)M 73 nt0.95□□□□□ -2.26
RIM101P33400 tF(GAA)P1tF(GAA)P1 73 nt0.95□□□□□ -2.26
RIM101P33400 tF(GAA)P2tF(GAA)P2 73 nt0.95□□□□□ -2.26
RIM101P33400 FMP27YLR454W 7887 nt0.89□□□□□ -2.27
RIM101P33400 snR128snR128 126 nt0.87□□□□□ -2.27
RIM101P33400 UTP10YJL109C 5310 nt0.87□□□□□ -2.27
RIM101P33400 YMR272W-AYMR272W-A 114 nt0.85□□□□□ -2.27
RIM101P33400 tC(GCA)QtC(GCA)Q 76 nt0.83□□□□□ -2.28
RIM101P33400 YJL113WYJL113W 4647 nt0.83□□□□□ -2.28
RIM101P33400 YOL014WYOL014W 375 nt0.78□□□□□ -2.28
RIM101P33400 RPL41BYDL133C-A 78 nt0.75□□□□□ -2.29
RIM101P33400 YKL145W-AYKL145W-A 93 nt0.73□□□□□ -2.29
RIM101P33400 YOR335W-AYOR335W-A 81 nt0.73□□□□□ -2.29
RIM101P33400 tT(AGU)BtT(AGU)B 73 nt0.7□□□□□ -2.3
RIM101P33400 tT(AGU)CtT(AGU)C 73 nt0.7□□□□□ -2.3
RIM101P33400 tT(AGU)DtT(AGU)D 73 nt0.7□□□□□ -2.3
RIM101P33400 tT(AGU)HtT(AGU)H 73 nt0.7□□□□□ -2.3
RIM101P33400 tT(AGU)I1tT(AGU)I1 73 nt0.7□□□□□ -2.3
RIM101P33400 tT(AGU)I2tT(AGU)I2 73 nt0.7□□□□□ -2.3
RIM101P33400 tT(AGU)JtT(AGU)J 73 nt0.7□□□□□ -2.3
Retrieved 100 of 7,029 protein–RNA pairs in 12.5 ms