Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.05■□□□□ 0.96
BDNFP23560 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.05■□□□□ 0.96
BDNFP23560 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.05■□□□□ 0.96
BDNFP23560 AL121906.2-201ENST00000621597 723 ntBASIC21.05■□□□□ 0.96
BDNFP23560 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.05■□□□□ 0.96
BDNFP23560 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
BDNFP23560 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.05■□□□□ 0.96
BDNFP23560 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
BDNFP23560 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.04■□□□□ 0.96
BDNFP23560 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
BDNFP23560 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.04■□□□□ 0.96
BDNFP23560 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
BDNFP23560 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.04■□□□□ 0.96
BDNFP23560 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.04■□□□□ 0.96
BDNFP23560 AC008550.1-201ENST00000511500 884 ntBASIC21.04■□□□□ 0.96
BDNFP23560 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.04■□□□□ 0.96
BDNFP23560 AC110285.5-201ENST00000611501 352 ntBASIC21.04■□□□□ 0.96
BDNFP23560 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.04■□□□□ 0.96
BDNFP23560 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.04■□□□□ 0.96
BDNFP23560 FEM1AP1-201ENST00000431297 1995 ntBASIC21.04■□□□□ 0.96
BDNFP23560 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
BDNFP23560 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
BDNFP23560 KRT16P6-202ENST00000425692 1426 ntBASIC21.04■□□□□ 0.96
BDNFP23560 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.04■□□□□ 0.96
BDNFP23560 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BDNFP23560 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BDNFP23560 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.03■□□□□ 0.96
BDNFP23560 AP005212.1-201ENST00000581547 1997 ntBASIC21.03■□□□□ 0.96
BDNFP23560 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BDNFP23560 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.03■□□□□ 0.96
BDNFP23560 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
BDNFP23560 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
BDNFP23560 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
BDNFP23560 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
BDNFP23560 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.03■□□□□ 0.96
BDNFP23560 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.03■□□□□ 0.96
BDNFP23560 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.03■□□□□ 0.96
BDNFP23560 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
BDNFP23560 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BDNFP23560 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
BDNFP23560 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
BDNFP23560 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
BDNFP23560 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.02■□□□□ 0.96
BDNFP23560 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
BDNFP23560 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BDNFP23560 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.02■□□□□ 0.96
BDNFP23560 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.02■□□□□ 0.96
BDNFP23560 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.02■□□□□ 0.96
BDNFP23560 RPS2P4-201ENST00000476944 856 ntBASIC21.02■□□□□ 0.96
BDNFP23560 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
BDNFP23560 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.02■□□□□ 0.96
BDNFP23560 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.02■□□□□ 0.96
BDNFP23560 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
BDNFP23560 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
BDNFP23560 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
BDNFP23560 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
BDNFP23560 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
BDNFP23560 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
BDNFP23560 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.01■□□□□ 0.95
BDNFP23560 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.01■□□□□ 0.95
BDNFP23560 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
BDNFP23560 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.01■□□□□ 0.95
BDNFP23560 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.01■□□□□ 0.95
BDNFP23560 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BDNFP23560 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.01■□□□□ 0.95
BDNFP23560 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BDNFP23560 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms