Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4L2-201ENST00000561772 1275 ntBASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4L6-201ENST00000626483 1275 ntBASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4L1-201ENST00000627662 1275 ntBASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4L8-201ENST00000629013 1275 ntBASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4L3-201ENST00000630187 1275 ntBASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4L7-201ENST00000630678 1275 ntBASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 DUX4L5-201ENST00000630834 1275 ntBASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
TRAV1-2A0A0B4J238 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 RASA4CP-201ENST00000424092 1398 ntBASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 PGM5P4-201ENST00000421970 445 ntBASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
TRAV1-2A0A0B4J238 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 AC105265.2-201ENST00000467189 838 ntBASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 AP001330.3-201ENST00000520123 633 ntBASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRAV1-2A0A0B4J238 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-2A0A0B4J238 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms