Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SAPCD2P1-201ENST00000395413 1184 ntBASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AF201337.1-201ENST00000520239 748 ntBASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC105036.2-201ENST00000569468 176 ntBASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC010980.2-201ENST00000587099 1412 ntBASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AL356652.1-201ENST00000615962 565 ntBASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NT5C-211ENST00000582170 653 ntTSL 3 BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 MIR4497-201ENST00000583208 89 ntBASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC26.85■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 AC128676.1-201ENST00000454392 318 ntBASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
SENP3-EIF4A1A0A087X0R7 BID-204ENST00000399767 2129 ntTSL 2 BASIC26.83■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AC087633.2-202ENST00000565166 1439 ntBASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AL691432.2-201ENST00000607222 2038 ntBASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 TK2-213ENST00000563369 882 ntTSL 5 BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MIR4758-201ENST00000577688 71 ntBASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC26.82■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC26.81■■□□□ 1.88
SENP3-EIF4A1A0A087X0R7 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms