Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC40.6■■■■■ 4.09
COL17A1Q9UMD9 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC40.6■■■■■ 4.09
COL17A1Q9UMD9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC40.59■■■■■ 4.09
COL17A1Q9UMD9 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC40.58■■■■■ 4.09
COL17A1Q9UMD9 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC40.58■■■■■ 4.09
COL17A1Q9UMD9 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC40.57■■■■■ 4.08
COL17A1Q9UMD9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC40.54■■■■■ 4.08
COL17A1Q9UMD9 AL592295.1-201ENST00000400984 884 ntBASIC40.53■■■■■ 4.08
COL17A1Q9UMD9 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC40.53■■■■■ 4.08
COL17A1Q9UMD9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC40.52■■■■■ 4.08
COL17A1Q9UMD9 TSPY13P-201ENST00000338964 914 ntBASIC40.52■■■■■ 4.08
COL17A1Q9UMD9 AC004987.1-201ENST00000428627 508 ntBASIC40.51■■■■■ 4.08
COL17A1Q9UMD9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC40.51■■■■■ 4.08
COL17A1Q9UMD9 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC40.51■■■■■ 4.08
COL17A1Q9UMD9 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC40.5■■■■■ 4.07
COL17A1Q9UMD9 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC40.5■■■■■ 4.07
COL17A1Q9UMD9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC40.5■■■■■ 4.07
COL17A1Q9UMD9 KRT18P60-201ENST00000312876 1297 ntBASIC40.49■■■■■ 4.07
COL17A1Q9UMD9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC40.49■■■■■ 4.07
COL17A1Q9UMD9 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC40.47■■■■■ 4.07
COL17A1Q9UMD9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC40.46■■■■■ 4.07
COL17A1Q9UMD9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC40.46■■■■■ 4.07
COL17A1Q9UMD9 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC40.45■■■■■ 4.07
COL17A1Q9UMD9 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC40.45■■■■■ 4.07
COL17A1Q9UMD9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC40.45■■■■■ 4.07
COL17A1Q9UMD9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC40.44■■■■■ 4.06
COL17A1Q9UMD9 ATP5G2P3-201ENST00000429083 425 ntBASIC40.44■■■■■ 4.06
COL17A1Q9UMD9 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC40.42■■■■■ 4.06
COL17A1Q9UMD9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC40.42■■■■■ 4.06
COL17A1Q9UMD9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC40.42■■■■■ 4.06
COL17A1Q9UMD9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC40.41■■■■■ 4.06
COL17A1Q9UMD9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC40.41■■■■■ 4.06
COL17A1Q9UMD9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC40.4■■■■■ 4.06
COL17A1Q9UMD9 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC40.4■■■■■ 4.06
COL17A1Q9UMD9 MTURN-203ENST00000409688 843 ntTSL 2 BASIC40.37■■■■■ 4.05
COL17A1Q9UMD9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC40.36■■■■■ 4.05
COL17A1Q9UMD9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC40.36■■■■■ 4.05
COL17A1Q9UMD9 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC40.35■■■■■ 4.05
COL17A1Q9UMD9 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC40.35■■■■■ 4.05
COL17A1Q9UMD9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC40.35■■■■■ 4.05
COL17A1Q9UMD9 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC40.35■■■■■ 4.05
COL17A1Q9UMD9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC40.33■■■■■ 4.05
COL17A1Q9UMD9 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC40.32■■■■■ 4.05
COL17A1Q9UMD9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC40.32■■■■■ 4.04
COL17A1Q9UMD9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC40.32■■■■■ 4.04
COL17A1Q9UMD9 AL035685.1-201ENST00000636663 812 ntBASIC40.32■■■■■ 4.04
COL17A1Q9UMD9 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC40.31■■■■■ 4.04
COL17A1Q9UMD9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC40.31■■■■■ 4.04
COL17A1Q9UMD9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC40.31■■■■■ 4.04
COL17A1Q9UMD9 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC40.31■■■■■ 4.04
COL17A1Q9UMD9 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC40.3■■■■■ 4.04
COL17A1Q9UMD9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC40.29■■■■■ 4.04
COL17A1Q9UMD9 HES4-204ENST00000484667 667 ntTSL 3 BASIC40.29■■■■■ 4.04
COL17A1Q9UMD9 LINC00273-201ENST00000539813 1452 ntBASIC40.28■■■■■ 4.04
COL17A1Q9UMD9 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC40.28■■■■■ 4.04
COL17A1Q9UMD9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC40.28■■■■■ 4.04
COL17A1Q9UMD9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC40.28■■■■■ 4.04
COL17A1Q9UMD9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC40.28■■■■■ 4.04
COL17A1Q9UMD9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC40.27■■■■■ 4.04
COL17A1Q9UMD9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC40.27■■■■■ 4.04
COL17A1Q9UMD9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC40.26■■■■■ 4.03
COL17A1Q9UMD9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC40.26■■■■■ 4.03
COL17A1Q9UMD9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC40.25■■■■■ 4.03
COL17A1Q9UMD9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC40.25■■■■■ 4.03
COL17A1Q9UMD9 AC060814.1-201ENST00000554326 538 ntBASIC40.25■■■■■ 4.03
COL17A1Q9UMD9 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC40.24■■■■■ 4.03
COL17A1Q9UMD9 AL451085.2-201ENST00000605085 799 ntBASIC40.23■■■■■ 4.03
COL17A1Q9UMD9 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC40.22■■■■■ 4.03
COL17A1Q9UMD9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC40.21■■■■■ 4.03
COL17A1Q9UMD9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC40.21■■■■■ 4.03
COL17A1Q9UMD9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC40.21■■■■■ 4.03
COL17A1Q9UMD9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC40.21■■■■■ 4.03
COL17A1Q9UMD9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC40.2■■■■■ 4.03
COL17A1Q9UMD9 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC40.18■■■■■ 4.02
COL17A1Q9UMD9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC40.18■■■■■ 4.02
COL17A1Q9UMD9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC40.17■■■■■ 4.02
COL17A1Q9UMD9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC40.16■■■■■ 4.02
COL17A1Q9UMD9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC40.16■■■■■ 4.02
COL17A1Q9UMD9 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC40.16■■■■■ 4.02
COL17A1Q9UMD9 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC40.16■■■■■ 4.02
COL17A1Q9UMD9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC40.15■■■■■ 4.02
COL17A1Q9UMD9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC40.15■■■■■ 4.02
COL17A1Q9UMD9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC40.15■■■■■ 4.02
COL17A1Q9UMD9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
COL17A1Q9UMD9 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC40.14■■■■■ 4.02
COL17A1Q9UMD9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC40.13■■■■■ 4.02
COL17A1Q9UMD9 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC40.13■■■■■ 4.02
COL17A1Q9UMD9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC40.11■■■■■ 4.01
COL17A1Q9UMD9 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC40.1■■■■■ 4.01
COL17A1Q9UMD9 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC40.09■■■■■ 4.01
COL17A1Q9UMD9 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC40.09■■■■■ 4.01
COL17A1Q9UMD9 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC40.09■■■■■ 4.01
COL17A1Q9UMD9 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC40.09■■■■■ 4.01
COL17A1Q9UMD9 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC40.08■■■■■ 4.01
COL17A1Q9UMD9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC40.08■■■■■ 4.01
COL17A1Q9UMD9 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC40.08■■■■■ 4.01
COL17A1Q9UMD9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC40.07■■■■■ 4
COL17A1Q9UMD9 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC40.06■■■■■ 4
COL17A1Q9UMD9 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC40.06■■■■■ 4
COL17A1Q9UMD9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC40.06■■■■■ 4
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms