Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ALMS1Q8TCU4 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ALMS1Q8TCU4 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ALMS1Q8TCU4 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC18.04■□□□□ 0.48
ALMS1Q8TCU4 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ALMS1Q8TCU4 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.04■□□□□ 0.48
ALMS1Q8TCU4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
ALMS1Q8TCU4 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
ALMS1Q8TCU4 RARRES2P1-201ENST00000474487 481 ntBASIC18.02■□□□□ 0.48
ALMS1Q8TCU4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.02■□□□□ 0.47
ALMS1Q8TCU4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
ALMS1Q8TCU4 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
ALMS1Q8TCU4 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ALMS1Q8TCU4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
ALMS1Q8TCU4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ALMS1Q8TCU4 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ALMS1Q8TCU4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ALMS1Q8TCU4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ALMS1Q8TCU4 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC18■□□□□ 0.47
ALMS1Q8TCU4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC18■□□□□ 0.47
ALMS1Q8TCU4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
ALMS1Q8TCU4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC18■□□□□ 0.47
ALMS1Q8TCU4 TSPY13P-201ENST00000338964 914 ntBASIC17.99■□□□□ 0.47
ALMS1Q8TCU4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC17.98■□□□□ 0.47
ALMS1Q8TCU4 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC17.98■□□□□ 0.47
ALMS1Q8TCU4 AL451085.2-201ENST00000605085 799 ntBASIC17.98■□□□□ 0.47
ALMS1Q8TCU4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ALMS1Q8TCU4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC17.98■□□□□ 0.47
ALMS1Q8TCU4 AC004987.1-201ENST00000428627 508 ntBASIC17.97■□□□□ 0.47
ALMS1Q8TCU4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC17.97■□□□□ 0.47
ALMS1Q8TCU4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ALMS1Q8TCU4 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 AC022413.1-201ENST00000624602 984 ntBASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 AL035685.1-201ENST00000636663 812 ntBASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 AC060814.1-201ENST00000554326 538 ntBASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC17.96■□□□□ 0.47
ALMS1Q8TCU4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC17.95■□□□□ 0.46
ALMS1Q8TCU4 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC17.95■□□□□ 0.46
ALMS1Q8TCU4 U85056.1-201ENST00000616429 682 ntBASIC17.95■□□□□ 0.46
ALMS1Q8TCU4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC17.95■□□□□ 0.46
ALMS1Q8TCU4 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC17.95■□□□□ 0.46
ALMS1Q8TCU4 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
ALMS1Q8TCU4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
ALMS1Q8TCU4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
ALMS1Q8TCU4 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
ALMS1Q8TCU4 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
ALMS1Q8TCU4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
ALMS1Q8TCU4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
ALMS1Q8TCU4 GUK1-208ENST00000366728 842 ntTSL 2 BASIC17.92■□□□□ 0.46
ALMS1Q8TCU4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC17.91■□□□□ 0.46
ALMS1Q8TCU4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC17.91■□□□□ 0.46
ALMS1Q8TCU4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC17.91■□□□□ 0.46
ALMS1Q8TCU4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC17.91■□□□□ 0.46
ALMS1Q8TCU4 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
ALMS1Q8TCU4 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
ALMS1Q8TCU4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
ALMS1Q8TCU4 ATP5G2P3-201ENST00000429083 425 ntBASIC17.9■□□□□ 0.46
ALMS1Q8TCU4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC17.89■□□□□ 0.45
ALMS1Q8TCU4 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
ALMS1Q8TCU4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
ALMS1Q8TCU4 KRT18P60-201ENST00000312876 1297 ntBASIC17.88■□□□□ 0.45
ALMS1Q8TCU4 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
ALMS1Q8TCU4 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC17.87■□□□□ 0.45
ALMS1Q8TCU4 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
ALMS1Q8TCU4 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC17.87■□□□□ 0.45
ALMS1Q8TCU4 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
ALMS1Q8TCU4 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
ALMS1Q8TCU4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ALMS1Q8TCU4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
ALMS1Q8TCU4 AL592295.1-201ENST00000400984 884 ntBASIC17.86■□□□□ 0.45
ALMS1Q8TCU4 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC17.86■□□□□ 0.45
ALMS1Q8TCU4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ALMS1Q8TCU4 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
ALMS1Q8TCU4 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ALMS1Q8TCU4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC17.85■□□□□ 0.45
ALMS1Q8TCU4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC17.85■□□□□ 0.45
ALMS1Q8TCU4 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC17.85■□□□□ 0.45
ALMS1Q8TCU4 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC17.85■□□□□ 0.45
ALMS1Q8TCU4 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
ALMS1Q8TCU4 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.84■□□□□ 0.45
ALMS1Q8TCU4 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
ALMS1Q8TCU4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ALMS1Q8TCU4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC17.83■□□□□ 0.45
ALMS1Q8TCU4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC17.83■□□□□ 0.45
ALMS1Q8TCU4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ALMS1Q8TCU4 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ALMS1Q8TCU4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC17.83■□□□□ 0.44
ALMS1Q8TCU4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ALMS1Q8TCU4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms