Protein–RNA interactions for Protein: Q8CC84

Lysmd4, LysM and putative peptidoglycan-binding domain-containing protein 4, mousemouse

Predictions only

Length 293 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lysmd4Q8CC84 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Lysmd4Q8CC84 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Lysmd4Q8CC84 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Lysmd4Q8CC84 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Lysmd4Q8CC84 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Lysmd4Q8CC84 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Lysmd4Q8CC84 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Lysmd4Q8CC84 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Lysmd4Q8CC84 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Lysmd4Q8CC84 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.46■■□□□ 1.03
Lysmd4Q8CC84 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Lysmd4Q8CC84 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Lysmd4Q8CC84 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Lysmd4Q8CC84 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Lysmd4Q8CC84 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Lysmd4Q8CC84 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Lysmd4Q8CC84 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Lysmd4Q8CC84 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Lysmd4Q8CC84 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Lysmd4Q8CC84 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Lysmd4Q8CC84 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Lysmd4Q8CC84 Gm24804-201ENSMUST00000174982 85 ntBASIC21.42■■□□□ 1.02
Lysmd4Q8CC84 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Lysmd4Q8CC84 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Lysmd4Q8CC84 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Lysmd4Q8CC84 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lysmd4Q8CC84 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lysmd4Q8CC84 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lysmd4Q8CC84 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Lysmd4Q8CC84 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Lysmd4Q8CC84 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.39■■□□□ 1.02
Lysmd4Q8CC84 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Lysmd4Q8CC84 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Lysmd4Q8CC84 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Lysmd4Q8CC84 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lysmd4Q8CC84 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Lysmd4Q8CC84 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Lysmd4Q8CC84 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Lysmd4Q8CC84 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
Lysmd4Q8CC84 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Lysmd4Q8CC84 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lysmd4Q8CC84 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lysmd4Q8CC84 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lysmd4Q8CC84 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Lysmd4Q8CC84 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lysmd4Q8CC84 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Lysmd4Q8CC84 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Lysmd4Q8CC84 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC21.33■■□□□ 1.01
Lysmd4Q8CC84 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Lysmd4Q8CC84 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Lysmd4Q8CC84 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC21.32■■□□□ 1
Lysmd4Q8CC84 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lysmd4Q8CC84 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lysmd4Q8CC84 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lysmd4Q8CC84 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Lysmd4Q8CC84 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Lysmd4Q8CC84 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Lysmd4Q8CC84 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Lysmd4Q8CC84 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lysmd4Q8CC84 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lysmd4Q8CC84 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Lysmd4Q8CC84 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.31■■□□□ 1
Lysmd4Q8CC84 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC21.3■■□□□ 1
Lysmd4Q8CC84 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lysmd4Q8CC84 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.29■■□□□ 1
Lysmd4Q8CC84 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.29■■□□□ 1
Lysmd4Q8CC84 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Lysmd4Q8CC84 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Lysmd4Q8CC84 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.28■■□□□ 1
Lysmd4Q8CC84 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.28■■□□□ 1
Lysmd4Q8CC84 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lysmd4Q8CC84 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.27■■□□□ 1
Lysmd4Q8CC84 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lysmd4Q8CC84 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Lysmd4Q8CC84 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Lysmd4Q8CC84 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lysmd4Q8CC84 Gm16148-201ENSMUST00000119653 893 ntBASIC21.26■□□□□ 0.99
Lysmd4Q8CC84 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lysmd4Q8CC84 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Lysmd4Q8CC84 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lysmd4Q8CC84 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Lysmd4Q8CC84 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lysmd4Q8CC84 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Lysmd4Q8CC84 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lysmd4Q8CC84 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lysmd4Q8CC84 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Lysmd4Q8CC84 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lysmd4Q8CC84 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.23■□□□□ 0.99
Lysmd4Q8CC84 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lysmd4Q8CC84 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lysmd4Q8CC84 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.22■□□□□ 0.99
Lysmd4Q8CC84 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Lysmd4Q8CC84 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lysmd4Q8CC84 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lysmd4Q8CC84 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lysmd4Q8CC84 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.21■□□□□ 0.99
Lysmd4Q8CC84 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
Lysmd4Q8CC84 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Lysmd4Q8CC84 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Lysmd4Q8CC84 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms