Protein–RNA interactions for Protein: Q8CC84

Lysmd4, LysM and putative peptidoglycan-binding domain-containing protein 4, mousemouse

Predictions only

Length 293 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lysmd4Q8CC84 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Lysmd4Q8CC84 Gm25239-201ENSMUST00000174915 86 ntBASIC30.7■■■□□ 2.51
Lysmd4Q8CC84 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
Lysmd4Q8CC84 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Lysmd4Q8CC84 Psd-208ENSMUST00000224556 2034 ntBASIC29.49■■■□□ 2.31
Lysmd4Q8CC84 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Lysmd4Q8CC84 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Lysmd4Q8CC84 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Lysmd4Q8CC84 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
Lysmd4Q8CC84 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Lysmd4Q8CC84 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Lysmd4Q8CC84 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Lysmd4Q8CC84 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Lysmd4Q8CC84 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Lysmd4Q8CC84 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.81■■■□□ 2.04
Lysmd4Q8CC84 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Lysmd4Q8CC84 Gm15042-201ENSMUST00000120212 883 ntBASIC27.74■■■□□ 2.03
Lysmd4Q8CC84 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Lysmd4Q8CC84 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Lysmd4Q8CC84 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
Lysmd4Q8CC84 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Lysmd4Q8CC84 Gm15045-201ENSMUST00000117359 883 ntBASIC27.34■■□□□ 1.97
Lysmd4Q8CC84 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Lysmd4Q8CC84 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
Lysmd4Q8CC84 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Lysmd4Q8CC84 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Lysmd4Q8CC84 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Lysmd4Q8CC84 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Lysmd4Q8CC84 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC26.96■■□□□ 1.91
Lysmd4Q8CC84 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Lysmd4Q8CC84 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.88■■□□□ 1.89
Lysmd4Q8CC84 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
Lysmd4Q8CC84 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.84■■□□□ 1.89
Lysmd4Q8CC84 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
Lysmd4Q8CC84 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Lysmd4Q8CC84 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.57■■□□□ 1.84
Lysmd4Q8CC84 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Lysmd4Q8CC84 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Lysmd4Q8CC84 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Lysmd4Q8CC84 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Lysmd4Q8CC84 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.42■■□□□ 1.82
Lysmd4Q8CC84 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Lysmd4Q8CC84 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Lysmd4Q8CC84 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.37■■□□□ 1.81
Lysmd4Q8CC84 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.35■■□□□ 1.81
Lysmd4Q8CC84 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Lysmd4Q8CC84 Gm24109-201ENSMUST00000175489 103 ntBASIC26.26■■□□□ 1.79
Lysmd4Q8CC84 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
Lysmd4Q8CC84 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Lysmd4Q8CC84 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Lysmd4Q8CC84 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Lysmd4Q8CC84 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Lysmd4Q8CC84 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Lysmd4Q8CC84 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Lysmd4Q8CC84 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Lysmd4Q8CC84 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Lysmd4Q8CC84 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Lysmd4Q8CC84 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Lysmd4Q8CC84 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Lysmd4Q8CC84 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Lysmd4Q8CC84 Gm23366-201ENSMUST00000175022 89 ntBASIC25.76■■□□□ 1.71
Lysmd4Q8CC84 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.74■■□□□ 1.71
Lysmd4Q8CC84 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
Lysmd4Q8CC84 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Lysmd4Q8CC84 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Lysmd4Q8CC84 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Lysmd4Q8CC84 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Lysmd4Q8CC84 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Lysmd4Q8CC84 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Lysmd4Q8CC84 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.55■■□□□ 1.68
Lysmd4Q8CC84 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Lysmd4Q8CC84 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
Lysmd4Q8CC84 AC153911.1-202ENSMUST00000218534 1034 ntBASIC25.46■■□□□ 1.67
Lysmd4Q8CC84 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
Lysmd4Q8CC84 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Lysmd4Q8CC84 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Lysmd4Q8CC84 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Lysmd4Q8CC84 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
Lysmd4Q8CC84 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Lysmd4Q8CC84 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
Lysmd4Q8CC84 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Lysmd4Q8CC84 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Lysmd4Q8CC84 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Lysmd4Q8CC84 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC25.2■■□□□ 1.62
Lysmd4Q8CC84 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
Lysmd4Q8CC84 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Lysmd4Q8CC84 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Lysmd4Q8CC84 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
Lysmd4Q8CC84 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Lysmd4Q8CC84 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC25■■□□□ 1.59
Lysmd4Q8CC84 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Lysmd4Q8CC84 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Lysmd4Q8CC84 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Lysmd4Q8CC84 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Lysmd4Q8CC84 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Lysmd4Q8CC84 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Lysmd4Q8CC84 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Lysmd4Q8CC84 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Lysmd4Q8CC84 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
Lysmd4Q8CC84 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.77■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 8.5 ms