Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AL049541.2-201ENST00000626377 555 ntBASIC7.19□□□□□ -1.26
PCDH9Q9HC56 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 CR1-204ENST00000367052 7469 ntTSL 5 BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 CR1-205ENST00000367053 7469 ntTSL 5 BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 MROH3P-201ENST00000435735 2676 ntBASIC7.19□□□□□ -1.26
PCDH9Q9HC56 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 AP005139.1-201ENST00000580702 1647 ntBASIC7.19□□□□□ -1.26
PCDH9Q9HC56 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
PCDH9Q9HC56 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC007938.1-201ENST00000562524 2902 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC110716.2-201ENST00000563865 3945 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 CLEC4A-202ENST00000345999 841 ntTSL 5 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 RN7SKP30-201ENST00000411373 334 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC134879.1-201ENST00000426062 394 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 PHB2P1-201ENST00000434943 890 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 PMS2P9-201ENST00000441237 515 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 MIR4422HG-201ENST00000451250 638 ntTSL 3 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 RNA5SP518-201ENST00000515957 119 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC007950.1-201ENST00000560465 615 ntTSL 3 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 MIR5095-201ENST00000578844 88 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC011471.4-201ENST00000638271 216 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AL354702.2-202ENST00000641481 890 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC079949.2-201ENST00000617117 2933 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 QRSL1P3-201ENST00000552666 1316 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC119674.1-204ENST00000641348 1343 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.18□□□□□ -1.26
PCDH9Q9HC56 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC7.18□□□□□ -1.26
PCDH9Q9HC56 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 IFT74-202ENST00000429045 1462 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 MARK2P4-201ENST00000503381 2380 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AL596244.1-201ENST00000567068 3779 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 SMARCA2-211ENST00000417599 980 ntTSL 5 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 HSPE1P27-201ENST00000430808 296 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 RPL14P5-201ENST00000436474 730 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 LSM3P3-201ENST00000436601 306 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC114982.2-201ENST00000461396 358 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 RPL34P34-201ENST00000465389 354 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC091982.1-202ENST00000473923 343 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 NF1P12-201ENST00000549593 583 ntBASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AL355102.4-201ENST00000553638 738 ntTSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC7.17□□□□□ -1.26
PCDH9Q9HC56 ENSA-215ENST00000638926 360 ntTSL 5 BASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms