Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC11.29□□□□□ -0.6
CUX1P39880 RN7SKP35-201ENST00000517210 151 ntBASIC11.29□□□□□ -0.6
CUX1P39880 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC11.29□□□□□ -0.6
CUX1P39880 FAT3-206ENST00000533797 7894 ntTSL 2 BASIC11.29□□□□□ -0.6
CUX1P39880 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
CUX1P39880 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CUX1P39880 SLIT2-203ENST00000503837 4752 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
CUX1P39880 PIEZO2-201ENST00000302079 9356 ntTSL 5 BASIC11.28□□□□□ -0.6
CUX1P39880 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC11.28□□□□□ -0.6
CUX1P39880 THSD4-AS1-202ENST00000562634 2182 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 AC006141.1-201ENST00000581917 2170 ntBASIC11.28□□□□□ -0.6
CUX1P39880 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC11.28□□□□□ -0.6
CUX1P39880 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC11.28□□□□□ -0.6
CUX1P39880 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 AC132219.2-201ENST00000624416 2327 ntBASIC11.28□□□□□ -0.6
CUX1P39880 RNA5SP435-201ENST00000364044 108 ntBASIC11.28□□□□□ -0.6
CUX1P39880 RNA5SP485-201ENST00000365053 119 ntBASIC11.28□□□□□ -0.6
CUX1P39880 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
CUX1P39880 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC11.28□□□□□ -0.6
CUX1P39880 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC11.28□□□□□ -0.6
CUX1P39880 RPS7P12-201ENST00000422385 582 ntBASIC11.28□□□□□ -0.6
CUX1P39880 AC133965.1-201ENST00000452984 354 ntBASIC11.28□□□□□ -0.6
CUX1P39880 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC11.28□□□□□ -0.6
CUX1P39880 PFN2-209ENST00000481275 560 ntTSL 4 BASIC11.28□□□□□ -0.6
CUX1P39880 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC11.28□□□□□ -0.6
CUX1P39880 AC021220.1-201ENST00000507445 630 ntBASIC11.28□□□□□ -0.6
CUX1P39880 AP003115.1-201ENST00000569849 463 ntBASIC11.28□□□□□ -0.6
CUX1P39880 MIR6729-201ENST00000618194 65 ntBASIC11.28□□□□□ -0.6
CUX1P39880 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC11.28□□□□□ -0.6
CUX1P39880 C7-201ENST00000313164 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
CUX1P39880 AC105046.1-201ENST00000566457 4997 ntBASIC11.28□□□□□ -0.6
CUX1P39880 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
CUX1P39880 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
CUX1P39880 AC079949.2-201ENST00000617117 2933 ntBASIC11.28□□□□□ -0.6
CUX1P39880 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
CUX1P39880 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
CUX1P39880 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
CUX1P39880 C2orf49-201ENST00000258457 4768 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CUX1P39880 TRPM3-203ENST00000358082 4710 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
CUX1P39880 TRPM3-215ENST00000408909 4701 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
CUX1P39880 PNN-201ENST00000216832 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CUX1P39880 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
CUX1P39880 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC11.27□□□□□ -0.61
CUX1P39880 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
CUX1P39880 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
CUX1P39880 OR7E99P-201ENST00000505750 922 ntBASIC11.27□□□□□ -0.61
CUX1P39880 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC11.27□□□□□ -0.61
CUX1P39880 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC11.27□□□□□ -0.61
CUX1P39880 ODF1-202ENST00000518835 368 ntTSL 3 BASIC11.27□□□□□ -0.61
CUX1P39880 ASB8-203ENST00000535988 679 ntTSL 2 BASIC11.27□□□□□ -0.61
CUX1P39880 CYCSP38-201ENST00000559840 322 ntBASIC11.27□□□□□ -0.61
CUX1P39880 AC090826.1-203ENST00000569235 490 ntBASIC11.27□□□□□ -0.61
CUX1P39880 RPSAP75-201ENST00000605848 301 ntBASIC11.27□□□□□ -0.61
CUX1P39880 BX323046.1-201ENST00000610145 535 ntBASIC11.27□□□□□ -0.61
CUX1P39880 DRG1-207ENST00000629688 309 ntTSL 5 BASIC11.27□□□□□ -0.61
CUX1P39880 AC073488.6-201ENST00000632293 754 ntBASIC11.27□□□□□ -0.61
CUX1P39880 PCBP2-206ENST00000455667 2741 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CUX1P39880 LPIN1-207ENST00000425416 5582 ntTSL 2 BASIC11.27□□□□□ -0.61
CUX1P39880 AOX2P-204ENST00000487742 3284 ntBASIC11.27□□□□□ -0.61
CUX1P39880 ZNF812P-202ENST00000536819 1890 ntTSL 2 BASIC11.27□□□□□ -0.61
CUX1P39880 ALDH1A1-201ENST00000297785 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CUX1P39880 ASH1L-201ENST00000368346 11942 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
CUX1P39880 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
CUX1P39880 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC11.26□□□□□ -0.61
CUX1P39880 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
CUX1P39880 SELP-201ENST00000263686 3142 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
CUX1P39880 OR8J1-201ENST00000303039 1074 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
CUX1P39880 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
CUX1P39880 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC11.26□□□□□ -0.61
CUX1P39880 RN7SL254P-201ENST00000460609 284 ntBASIC11.26□□□□□ -0.61
CUX1P39880 RPS10P20-201ENST00000494130 463 ntBASIC11.26□□□□□ -0.61
CUX1P39880 COX6B1P4-201ENST00000519826 484 ntBASIC11.26□□□□□ -0.61
CUX1P39880 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC11.26□□□□□ -0.61
CUX1P39880 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC11.26□□□□□ -0.61
CUX1P39880 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC11.26□□□□□ -0.61
CUX1P39880 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC11.26□□□□□ -0.61
CUX1P39880 AC024884.1-201ENST00000620583 399 ntBASIC11.26□□□□□ -0.61
CUX1P39880 AC073488.2-201ENST00000631903 751 ntBASIC11.26□□□□□ -0.61
CUX1P39880 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CUX1P39880 ZNF185-212ENST00000539731 4334 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
CUX1P39880 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC11.26□□□□□ -0.61
CUX1P39880 GLYATL1P1-201ENST00000528297 1607 ntBASIC11.26□□□□□ -0.61
CUX1P39880 CTAGE15-201ENST00000420911 2587 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
CUX1P39880 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
CUX1P39880 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC11.26□□□□□ -0.61
CUX1P39880 NLRP3-206ENST00000391828 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CUX1P39880 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC11.25□□□□□ -0.61
CUX1P39880 AL590762.1-201ENST00000391782 432 ntBASIC11.25□□□□□ -0.61
CUX1P39880 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC11.25□□□□□ -0.61
CUX1P39880 AL929472.1-201ENST00000417484 429 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AL354707.3-201ENST00000427308 331 ntBASIC11.25□□□□□ -0.61
CUX1P39880 AC110602.1-201ENST00000437414 318 ntBASIC11.25□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms