Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 REG4-204ENST00000530654 612 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL117192.1-204ENST00000553485 449 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL049780.1-201ENST00000554430 489 ntTSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC007066.2-202ENST00000566531 914 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC021506.1-201ENST00000581971 597 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL161725.1-210ENST00000590240 1224 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 EIF1-207ENST00000591776 797 ntTSL 4 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 EEF1A1P22-201ENST00000559385 1380 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 FOLH1B-202ENST00000529567 2145 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL136298.2-201ENST00000556497 1570 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC100810.3-201ENST00000633189 2240 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 AL035696.2-201ENST00000407941 709 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC012560.1-202ENST00000421324 535 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC244505.2-201ENST00000435089 759 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 CEACAMP5-201ENST00000448037 961 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 TDRG1-202ENST00000448433 1015 ntTSL 3 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 PRDX1P1-201ENST00000449329 596 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 B4GALT4-209ENST00000471675 712 ntTSL 3 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 HNRNPA1P17-201ENST00000496620 924 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 OR7E163P-201ENST00000505943 894 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 IGHVIII-26-1-201ENST00000520387 250 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC244034.2-201ENST00000562504 509 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC012181.2-201ENST00000570210 699 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 MIR6731-201ENST00000614863 72 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC127071.1-201ENST00000624997 712 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 METTL15-210ENST00000634721 1182 ntTSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 SLC30A8-208ENST00000521243 1393 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 DDX43P1-201ENST00000510713 1763 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
NKX3-1Q99801 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 AC008957.3-201ENST00000624112 2242 ntBASIC6.13□□□□□ -1.43
NKX3-1Q99801 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.13□□□□□ -1.43
NKX3-1Q99801 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms