Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC8.73□□□□□ -1.01
TRAIPQ9BWF2 DHX8-202ENST00000540306 3809 ntTSL 2 BASIC8.73□□□□□ -1.01
TRAIPQ9BWF2 ZNF849P-201ENST00000594711 1566 ntBASIC8.73□□□□□ -1.01
TRAIPQ9BWF2 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
TRAIPQ9BWF2 NCOA4P2-201ENST00000340589 1813 ntBASIC8.73□□□□□ -1.01
TRAIPQ9BWF2 LAX1-202ENST00000367217 1356 ntAPPRIS ALT2 TSL 2 BASIC8.73□□□□□ -1.01
TRAIPQ9BWF2 XRCC6P3-201ENST00000422187 1621 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 ZNF887P-201ENST00000431363 1407 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 MFSD8-220ENST00000641243 1422 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AIFM1-205ENST00000460436 1925 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 XRCC6P5-201ENST00000435236 1795 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 DYNLRB1-202ENST00000357156 675 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 BEND6-201ENST00000370745 579 ntTSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 RPL36A-202ENST00000392994 691 ntTSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC024937.2-201ENST00000411669 1242 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 TRIM60P5Y-201ENST00000413946 574 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 USP9YP21-201ENST00000420603 432 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 ELOBP4-201ENST00000423418 296 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 PRUNEP1-201ENST00000425846 705 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 SNX19-202ENST00000426933 888 ntTSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 GAPDHP34-201ENST00000432112 823 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 Z98752.2-201ENST00000432727 312 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 Z73417.1-201ENST00000447373 778 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 ZNF32-AS1-201ENST00000453284 434 ntTSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 SNRPD2P1-201ENST00000489253 354 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC114300.1-201ENST00000502347 280 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 SUMO2P17-201ENST00000504438 285 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC112673.1-201ENST00000513168 575 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AF279873.3-204ENST00000523336 784 ntTSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC092818.1-201ENST00000523411 639 ntTSL 3 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 OPRK1-204ENST00000524278 1195 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC079064.1-201ENST00000528365 362 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC084361.1-201ENST00000537730 607 ntTSL 3 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC134669.1-201ENST00000581275 672 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC005537.1-202ENST00000585996 666 ntTSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 MCM3AP-AS1-207ENST00000588753 589 ntTSL 4 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC016405.2-201ENST00000607393 312 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 MIR6745-201ENST00000612694 127 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC079395.3-201ENST00000615161 484 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC006386.1-201ENST00000619436 415 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 Metazoa_SRP.99-201ENST00000621370 254 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC024023.1-201ENST00000624530 922 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC007221.2-201ENST00000634367 948 ntTSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AP000842.4-201ENST00000638781 748 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AL139254.2-202ENST00000641937 1156 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 ETS1-204ENST00000526145 3389 ntTSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 FBXO9-203ENST00000370939 1580 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AC018880.1-201ENST00000418898 1319 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 LUARIS-201ENST00000436105 2916 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 HCP5-201ENST00000414046 2658 ntTSL 4 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 PHYHIPL-202ENST00000373880 3578 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 LINC00294-201ENST00000631190 3306 ntBASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC8.72□□□□□ -1.01
TRAIPQ9BWF2 ASAP1-IT2-201ENST00000626977 2031 ntBASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 CDC42-201ENST00000315554 1452 ntAPPRIS P5 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 CRNKL1-202ENST00000377340 4406 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 RNPC3-208ENST00000533099 3641 ntAPPRIS P2 TSL 5 BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 CDC42SE1-201ENST00000357235 3045 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 LHFPL3-AS2-202ENST00000631061 1832 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 ABHD4-203ENST00000428304 3366 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 MAPK10-313ENST00000641405 2469 ntBASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
TRAIPQ9BWF2 CASC19-281ENST00000642118 1554 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 AL136985.3-201ENST00000637377 2219 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 RNA5SP161-201ENST00000363871 115 ntBASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
TRAIPQ9BWF2 SNORA30-201ENST00000384028 129 ntBASIC8.71□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 219.7 ms