Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 AL035563.1-201ENST00000609087 1539 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC104698.1-201ENST00000435671 276 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 RN7SL58P-201ENST00000473445 294 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC018475.1-201ENST00000478358 465 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 RPL23AP8-201ENST00000479812 475 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC008040.4-201ENST00000494834 768 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 PGAM4P2-201ENST00000512491 721 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 SNHG1-223ENST00000545440 754 ntTSL 2 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 DPPA3P2-201ENST00000553589 478 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC021755.3-201ENST00000560376 864 ntTSL 5 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC243312.1-201ENST00000570582 275 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 IGLJCOR18-201ENST00000584002 424 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 LINC01837-204ENST00000593211 570 ntTSL 4 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 SPINK6-203ENST00000621437 605 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 AC007204.1-201ENST00000621794 555 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 AL139254.2-202ENST00000641937 1156 ntBASIC6.15□□□□□ -1.42
NKX3-1Q99801 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 OR10AD1-201ENST00000310248 1305 ntAPPRIS P1 BASIC6.15□□□□□ -1.43
NKX3-1Q99801 AC106872.6-201ENST00000514228 1346 ntBASIC6.15□□□□□ -1.43
NKX3-1Q99801 AC021231.1-201ENST00000559246 1342 ntTSL 5 BASIC6.15□□□□□ -1.43
NKX3-1Q99801 AC092725.2-201ENST00000567658 1389 ntBASIC6.15□□□□□ -1.43
NKX3-1Q99801 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
NKX3-1Q99801 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
NKX3-1Q99801 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
NKX3-1Q99801 MTCO1P46-201ENST00000451639 1491 ntBASIC6.15□□□□□ -1.43
NKX3-1Q99801 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC6.15□□□□□ -1.43
NKX3-1Q99801 AC010401.2-201ENST00000575137 4934 ntBASIC6.15□□□□□ -1.43
NKX3-1Q99801 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
NKX3-1Q99801 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
NKX3-1Q99801 AC022507.1-201ENST00000548349 1505 ntBASIC6.15□□□□□ -1.43
NKX3-1Q99801 CASC19-243ENST00000641588 1546 ntBASIC6.15□□□□□ -1.43
NKX3-1Q99801 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
NKX3-1Q99801 RPS2P45-201ENST00000469997 2057 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 OGFOD1P1-201ENST00000447552 1592 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC020978.6-201ENST00000571197 3177 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RPL12P13-201ENST00000310055 497 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 U3.48-201ENST00000363172 216 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 SNORA73B-201ENST00000363217 204 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RN7SKP211-201ENST00000363328 315 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RN7SKP107-201ENST00000364157 290 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RN7SKP1-201ENST00000365525 307 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL590762.1-201ENST00000391782 432 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 HNRNPH1P2-201ENST00000396845 1210 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC113608.1-201ENST00000398740 305 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 FTOP1-201ENST00000419363 861 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RPL17P17-201ENST00000419491 557 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 GAPDHP55-201ENST00000423136 803 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 AL121916.1-201ENST00000429405 308 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 GAS5-211ENST00000432536 959 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC019185.3-201ENST00000438805 323 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 OR52U1P-201ENST00000439752 923 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC079781.1-201ENST00000441505 394 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AC004692.1-201ENST00000455430 424 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RN7SL308P-201ENST00000464971 297 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RPS14P8-201ENST00000478778 369 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 RN7SL549P-201ENST00000478997 282 ntBASIC6.14□□□□□ -1.43
NKX3-1Q99801 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
NKX3-1Q99801 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms