Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
NKX3-1Q99801 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 XKRY2-202ENST00000623874 1581 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 XKRY-202ENST00000624960 1581 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 RNA5SP79-201ENST00000365193 109 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 NRIR-201ENST00000366140 799 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AAMDC-202ENST00000393427 531 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 HNRNPCP2-201ENST00000399515 881 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 PPP1R17-202ENST00000409146 569 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 IFNA12P-201ENST00000413147 571 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC109638.1-201ENST00000417406 326 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 EEF1GP7-201ENST00000422983 703 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 MED15P9-201ENST00000424716 533 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AL607028.1-201ENST00000433455 794 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC016396.1-201ENST00000440189 328 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 HSD17B3-AS1-201ENST00000448857 1072 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 NUCKS1P1-201ENST00000452067 703 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 RPS18P13-201ENST00000461260 454 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 RN7SL160P-201ENST00000468558 284 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 RPL23P10-201ENST00000468780 412 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC109454.1-201ENST00000471205 498 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 RN7SL338P-201ENST00000481467 293 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 RN7SL647P-201ENST00000485429 300 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 RPS10P20-201ENST00000494130 463 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 RPL34-204ENST00000502534 560 ntAPPRIS P1 TSL 4 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 PABPC1P1-201ENST00000506347 591 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC106800.2-201ENST00000514009 1103 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 IGLV10-67-201ENST00000519446 325 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC022679.2-201ENST00000522186 813 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AL135934.1-201ENST00000527684 537 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 EIF4EP5-201ENST00000528228 640 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC069360.1-202ENST00000533941 557 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC084361.1-201ENST00000537730 607 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 KLRD1-210ENST00000543777 789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 OR4F28P-201ENST00000559128 938 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC118757.1-202ENST00000589074 609 ntTSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 OR4F8P-201ENST00000589943 937 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC015802.4-202ENST00000591967 474 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC009955.2-201ENST00000597288 542 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC022239.4-201ENST00000602626 504 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AL021918.1-201ENST00000603933 236 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC143336.1-201ENST00000614164 836 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC244196.5-201ENST00000617347 406 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 TM2D2-203ENST00000456845 3295 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 NUMB-231ENST00000559312 1439 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
NKX3-1Q99801 GOT2P1-201ENST00000440922 1309 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 DDX50P1-201ENST00000438163 2400 ntBASIC6.23□□□□□ -1.41
NKX3-1Q99801 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
NKX3-1Q99801 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AL354719.2-201ENST00000429530 1454 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC122713.2-201ENST00000624942 3335 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 AL136531.3-201ENST00000624378 3658 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 OR10D3-201ENST00000318666 1030 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 RN7SKP36-201ENST00000363997 312 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 C6orf106-201ENST00000374021 916 ntAPPRIS ALT2 TSL 3 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 GAGE12E-201ENST00000381698 520 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
NKX3-1Q99801 FKBP1A-203ENST00000381724 976 ntTSL 2 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 TRAV6-201ENST00000390428 404 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
NKX3-1Q99801 MIR1231-201ENST00000408101 92 ntBASIC6.22□□□□□ -1.41
NKX3-1Q99801 AC009413.1-201ENST00000414823 399 ntBASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms