Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.39
DDX4Q9NQI0 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
DDX4Q9NQI0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 AL353807.1-201ENST00000427475 662 ntBASIC23.7■■□□□ 1.38
DDX4Q9NQI0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 AC073195.1-201ENST00000607241 877 ntBASIC23.7■■□□□ 1.38
DDX4Q9NQI0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
DDX4Q9NQI0 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 AL355355.2-201ENST00000442321 338 ntBASIC23.69■■□□□ 1.38
DDX4Q9NQI0 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 AC004264.1-201ENST00000608354 794 ntBASIC23.69■■□□□ 1.38
DDX4Q9NQI0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DDX4Q9NQI0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 AC097493.4-201ENST00000641197 219 ntBASIC23.68■■□□□ 1.38
DDX4Q9NQI0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DDX4Q9NQI0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 KRT18P21-201ENST00000515767 1272 ntBASIC23.67■■□□□ 1.38
DDX4Q9NQI0 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
DDX4Q9NQI0 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.66■■□□□ 1.38
DDX4Q9NQI0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC23.65■■□□□ 1.38
DDX4Q9NQI0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms