Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 CYP2T3P-201ENST00000601990 817 ntBASIC20.58■□□□□ 0.89
USP29Q9HBJ7 AC092118.2-201ENST00000613495 667 ntBASIC20.58■□□□□ 0.89
USP29Q9HBJ7 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.58■□□□□ 0.89
USP29Q9HBJ7 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP29Q9HBJ7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USP29Q9HBJ7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 AL355472.2-201ENST00000422958 438 ntBASIC20.57■□□□□ 0.88
USP29Q9HBJ7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 AC105020.6-201ENST00000621523 1217 ntBASIC20.57■□□□□ 0.88
USP29Q9HBJ7 AC066615.1-201ENST00000640911 628 ntBASIC20.57■□□□□ 0.88
USP29Q9HBJ7 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
USP29Q9HBJ7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.56■□□□□ 0.88
USP29Q9HBJ7 MIR4651-201ENST00000582622 73 ntBASIC20.56■□□□□ 0.88
USP29Q9HBJ7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 TMEM179-206ENST00000616017 1645 ntBASIC20.56■□□□□ 0.88
USP29Q9HBJ7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP29Q9HBJ7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 AC010980.2-201ENST00000587099 1412 ntBASIC20.55■□□□□ 0.88
USP29Q9HBJ7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.55■□□□□ 0.88
USP29Q9HBJ7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 POU5F1P3-201ENST00000428824 1078 ntBASIC20.54■□□□□ 0.88
USP29Q9HBJ7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
USP29Q9HBJ7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms