Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.54■□□□□ 0.4
LIME1Q9H400 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
LIME1Q9H400 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.54■□□□□ 0.4
LIME1Q9H400 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.54■□□□□ 0.4
LIME1Q9H400 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.54■□□□□ 0.4
LIME1Q9H400 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.54■□□□□ 0.4
LIME1Q9H400 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.54■□□□□ 0.4
LIME1Q9H400 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.54■□□□□ 0.4
LIME1Q9H400 C2orf69P4-201ENST00000565394 541 ntBASIC17.54■□□□□ 0.4
LIME1Q9H400 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.54■□□□□ 0.4
LIME1Q9H400 AP001412.1-201ENST00000608405 714 ntBASIC17.54■□□□□ 0.4
LIME1Q9H400 AC012306.2-201ENST00000609350 630 ntBASIC17.54■□□□□ 0.4
LIME1Q9H400 AC110285.5-201ENST00000611501 352 ntBASIC17.54■□□□□ 0.4
LIME1Q9H400 AC120498.8-201ENST00000614275 531 ntBASIC17.54■□□□□ 0.4
LIME1Q9H400 AC097493.4-201ENST00000641197 219 ntBASIC17.54■□□□□ 0.4
LIME1Q9H400 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIME1Q9H400 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
LIME1Q9H400 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
LIME1Q9H400 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.53■□□□□ 0.4
LIME1Q9H400 AP005212.1-201ENST00000581547 1997 ntBASIC17.53■□□□□ 0.4
LIME1Q9H400 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 PKD1P6-201ENST00000343738 4769 ntBASIC17.53■□□□□ 0.4
LIME1Q9H400 AL121603.2-201ENST00000557373 2117 ntBASIC17.53■□□□□ 0.4
LIME1Q9H400 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.53■□□□□ 0.4
LIME1Q9H400 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.53■□□□□ 0.4
LIME1Q9H400 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.53■□□□□ 0.4
LIME1Q9H400 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.53■□□□□ 0.4
LIME1Q9H400 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.53■□□□□ 0.4
LIME1Q9H400 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIME1Q9H400 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.52■□□□□ 0.4
LIME1Q9H400 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.52■□□□□ 0.4
LIME1Q9H400 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.52■□□□□ 0.4
LIME1Q9H400 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.52■□□□□ 0.4
LIME1Q9H400 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIME1Q9H400 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
LIME1Q9H400 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
LIME1Q9H400 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIME1Q9H400 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
LIME1Q9H400 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIME1Q9H400 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LIME1Q9H400 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIME1Q9H400 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
LIME1Q9H400 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LIME1Q9H400 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.51■□□□□ 0.39
LIME1Q9H400 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC17.51■□□□□ 0.39
LIME1Q9H400 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.51■□□□□ 0.39
LIME1Q9H400 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LIME1Q9H400 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
LIME1Q9H400 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.51■□□□□ 0.39
LIME1Q9H400 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.51■□□□□ 0.39
LIME1Q9H400 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIME1Q9H400 PRKY-204ENST00000533551 1019 ntBASIC17.51■□□□□ 0.39
LIME1Q9H400 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.51■□□□□ 0.39
LIME1Q9H400 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms