Protein–RNA interactions for Protein: Q8IVW4

CDKL3, Cyclin-dependent kinase-like 3, humanhuman

Predicted RBP Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3Q8IVW4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDKL3Q8IVW4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDKL3Q8IVW4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDKL3Q8IVW4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDKL3Q8IVW4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CDKL3Q8IVW4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 KRT16P6-202ENST00000425692 1426 ntBASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 AC092437.1-201ENST00000624794 1048 ntBASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDKL3Q8IVW4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDKL3Q8IVW4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDKL3Q8IVW4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDKL3Q8IVW4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CDKL3Q8IVW4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDKL3Q8IVW4 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDKL3Q8IVW4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDKL3Q8IVW4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 HLA-G-202ENST00000376815 851 ntBASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 HLA-G-203ENST00000376818 1127 ntBASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 C2orf69P4-201ENST00000565394 541 ntBASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 AC073111.5-205ENST00000641717 521 ntBASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 KRT17P1-201ENST00000399211 1546 ntBASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDKL3Q8IVW4 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 AC133552.2-202ENST00000575694 574 ntBASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 IKBKGP1-201ENST00000612193 1073 ntBASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CDKL3Q8IVW4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.49■□□□□ 0.87
CDKL3Q8IVW4 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDKL3Q8IVW4 AC125437.2-201ENST00000625180 2167 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms