Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF549Q6P9A3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF549Q6P9A3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF549Q6P9A3 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.83■□□□□ 0.76
ZNF549Q6P9A3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF549Q6P9A3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF549Q6P9A3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF549Q6P9A3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
ZNF549Q6P9A3 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF549Q6P9A3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 MKRN4P-201ENST00000444706 1521 ntBASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ZNF549Q6P9A3 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 AL031963.3-201ENST00000606441 850 ntBASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
ZNF549Q6P9A3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 TMEM179-206ENST00000616017 1645 ntBASIC19.8■□□□□ 0.76
ZNF549Q6P9A3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 LSM12P1-201ENST00000411836 588 ntBASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 BX276092.2-201ENST00000417668 665 ntBASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ZNF549Q6P9A3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF549Q6P9A3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF549Q6P9A3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms