Protein–RNA interactions for Protein: Q05787

HRD3, ERAD-associated E3 ubiquitin-protein ligase component HRD3, yeastyeast

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
HRD3Q05787 HUG1YML058W-A 207 nt1.3□□□□□ -2.2
HRD3Q05787 snR48snR48 113 nt1.3□□□□□ -2.2
HRD3Q05787 YJR029WYJR029W 5268 nt1.29□□□□□ -2.2
HRD3Q05787 YPR137C-BYPR137C-B 5268 nt1.29□□□□□ -2.2
HRD3Q05787 YFR012W-AYFR012W-A 87 nt1.29□□□□□ -2.2
HRD3Q05787 YGL182CYGL182C 324 nt1.29□□□□□ -2.2
HRD3Q05787 TRM732YMR259C 4263 nt1.29□□□□□ -2.2
HRD3Q05787 IML1YJR138W 4755 nt1.28□□□□□ -2.2
HRD3Q05787 YML002WYML002W 2214 nt1.28□□□□□ -2.2
HRD3Q05787 SEC21YNL287W 2808 nt1.28□□□□□ -2.2
HRD3Q05787 RPL26BYGR034W 384 nt1.28□□□□□ -2.2
HRD3Q05787 YLL020CYLL020C 306 nt1.28□□□□□ -2.2
HRD3Q05787 tL(UAA)QtL(UAA)Q 85 nt1.27□□□□□ -2.21
HRD3Q05787 CHS6YJL099W 2241 nt1.26□□□□□ -2.21
HRD3Q05787 snR190snR190 190 nt1.25□□□□□ -2.21
HRD3Q05787 BUD3YCL014W 4911 nt1.25□□□□□ -2.21
HRD3Q05787 TAH1YCR060W 336 nt1.24□□□□□ -2.21
HRD3Q05787 YBL039C-AYBL039C-A 84 nt1.24□□□□□ -2.21
HRD3Q05787 YNL205CYNL205C 423 nt1.24□□□□□ -2.21
HRD3Q05787 YCL001W-BYCL001W-B 255 nt1.24□□□□□ -2.21
HRD3Q05787 MSN5YDR335W 3675 nt1.24□□□□□ -2.21
HRD3Q05787 FYV10YIL097W 1551 nt1.23□□□□□ -2.21
HRD3Q05787 SEC3YER008C 4011 nt1.21□□□□□ -2.22
HRD3Q05787 SIP4YJL089W 2490 nt1.21□□□□□ -2.22
HRD3Q05787 tV(UAC)BtV(UAC)B 74 nt1.21□□□□□ -2.22
HRD3Q05787 tV(UAC)DtV(UAC)D 74 nt1.21□□□□□ -2.22
HRD3Q05787 snR85snR85 171 nt1.2□□□□□ -2.22
HRD3Q05787 YOR329W-AYOR329W-A 210 nt1.2□□□□□ -2.22
HRD3Q05787 ASE1YOR058C 2658 nt1.2□□□□□ -2.22
HRD3Q05787 STB6YKL072W 2301 nt1.19□□□□□ -2.22
HRD3Q05787 CLU1YMR012W 3834 nt1.19□□□□□ -2.22
HRD3Q05787 RAD9YDR217C 3930 nt1.18□□□□□ -2.22
HRD3Q05787 CDC39YCR093W 6327 nt1.18□□□□□ -2.22
HRD3Q05787 YLR041WYLR041W 321 nt1.18□□□□□ -2.22
HRD3Q05787 ROM2YLR371W 4071 nt1.17□□□□□ -2.22
HRD3Q05787 YLR232WYLR232W 348 nt1.17□□□□□ -2.22
HRD3Q05787 QCR9YGR183C 201 nt1.16□□□□□ -2.22
HRD3Q05787 YDR544CYDR544C 429 nt1.15□□□□□ -2.23
HRD3Q05787 YNL067W-BYNL067W-B 141 nt1.15□□□□□ -2.23
HRD3Q05787 PRP16YKR086W 3216 nt1.15□□□□□ -2.23
HRD3Q05787 SEC8YPR055W 3198 nt1.14□□□□□ -2.23
HRD3Q05787 tM(CAU)Q2tM(CAU)Q2 78 nt1.14□□□□□ -2.23
HRD3Q05787 OST4YDL232W 111 nt1.11□□□□□ -2.23
HRD3Q05787 YBR099CYBR099C 384 nt1.11□□□□□ -2.23
HRD3Q05787 snR39BsnR39B 96 nt1.11□□□□□ -2.23
HRD3Q05787 YCR095W-AYCR095W-A 159 nt1.1□□□□□ -2.23
HRD3Q05787 SOM1YEL059C-A 225 nt1.1□□□□□ -2.23
HRD3Q05787 YHR131W-AYHR131W-A 246 nt1.1□□□□□ -2.23
HRD3Q05787 YLR399W-AYLR399W-A 105 nt1.1□□□□□ -2.23
HRD3Q05787 BEM3YPL115C 3387 nt1.09□□□□□ -2.23
HRD3Q05787 YIL071W-AYIL071W-A 477 nt1.09□□□□□ -2.23
HRD3Q05787 YPR160W-AYPR160W-A 81 nt1.09□□□□□ -2.23
HRD3Q05787 SPT7YBR081C 3999 nt1.08□□□□□ -2.24
HRD3Q05787 tN(GUU)QtN(GUU)Q 71 nt1.07□□□□□ -2.24
HRD3Q05787 KAP120YPL125W 3099 nt1.06□□□□□ -2.24
HRD3Q05787 YDL073WYDL073W 2955 nt1.05□□□□□ -2.24
HRD3Q05787 COG6YNL041C 2520 nt1.04□□□□□ -2.24
HRD3Q05787 YDR210WYDR210W 228 nt1.04□□□□□ -2.24
HRD3Q05787 UBP3YER151C 2739 nt1.04□□□□□ -2.24
HRD3Q05787 BEM2YER155C 6504 nt1.04□□□□□ -2.24
HRD3Q05787 DOP1YDR141C 5097 nt1.03□□□□□ -2.24
HRD3Q05787 YJL127W-AYJL127W-A 117 nt1.03□□□□□ -2.24
HRD3Q05787 NST1YNL091W 3723 nt1.03□□□□□ -2.25
HRD3Q05787 PMP2YEL017C-A 132 nt1.02□□□□□ -2.25
HRD3Q05787 YSP1YHR155W 3687 nt1□□□□□ -2.25
HRD3Q05787 SEC1YDR164C 2175 nt0.97□□□□□ -2.25
HRD3Q05787 PAU12YGR294W 363 nt0.97□□□□□ -2.25
HRD3Q05787 PAU24YBR301W 363 nt0.97□□□□□ -2.25
HRD3Q05787 SCC2YDR180W 4482 nt0.97□□□□□ -2.25
HRD3Q05787 YBR072C-AYBR072C-A 162 nt0.96□□□□□ -2.26
HRD3Q05787 YGR146C-AYGR146C-A 162 nt0.95□□□□□ -2.26
HRD3Q05787 VAM6YDL077C 3150 nt0.95□□□□□ -2.26
HRD3Q05787 YNL103W-AYNL103W-A 90 nt0.94□□□□□ -2.26
HRD3Q05787 YPR117WYPR117W 7470 nt0.94□□□□□ -2.26
HRD3Q05787 RKR1YMR247C 4689 nt0.94□□□□□ -2.26
HRD3Q05787 GLG1YKR058W 1851 nt0.91□□□□□ -2.26
HRD3Q05787 UTP20YBL004W 7482 nt0.9□□□□□ -2.27
HRD3Q05787 TFB5YDR079C-A 219 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)BtF(GAA)B 73 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)FtF(GAA)F 73 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)GtF(GAA)G 73 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)H1tF(GAA)H1 73 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)H2tF(GAA)H2 73 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)MtF(GAA)M 73 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)P1tF(GAA)P1 73 nt0.89□□□□□ -2.27
HRD3Q05787 tF(GAA)P2tF(GAA)P2 73 nt0.89□□□□□ -2.27
HRD3Q05787 YIL142C-AYIL142C-A 333 nt0.89□□□□□ -2.27
HRD3Q05787 snR61snR61 90 nt0.88□□□□□ -2.27
HRD3Q05787 EMT1tM(CAU)D 73 nt0.88□□□□□ -2.27
HRD3Q05787 EMT5tM(CAU)J1 73 nt0.88□□□□□ -2.27
HRD3Q05787 EMT3tM(CAU)J2 73 nt0.88□□□□□ -2.27
HRD3Q05787 EMT4tM(CAU)M 73 nt0.88□□□□□ -2.27
HRD3Q05787 EMT2tM(CAU)O2 73 nt0.88□□□□□ -2.27
HRD3Q05787 BIR1YJR089W 2865 nt0.88□□□□□ -2.27
HRD3Q05787 ULP2YIL031W 3105 nt0.87□□□□□ -2.27
HRD3Q05787 YNL266WYNL266W 420 nt0.87□□□□□ -2.27
HRD3Q05787 YLL006W-AYLL006W-A 177 nt0.86□□□□□ -2.27
HRD3Q05787 YBL109WYBL109W 336 nt0.86□□□□□ -2.27
HRD3Q05787 YDR524C-AYDR524C-A 120 nt0.85□□□□□ -2.27
HRD3Q05787 YBR178WYBR178W 375 nt0.85□□□□□ -2.27
Retrieved 100 of 7,029 protein–RNA pairs in 14.1 ms