Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
COL7A1Q02388 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.41□□□□□ -0.1
COL7A1Q02388 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
COL7A1Q02388 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC14.41□□□□□ -0.1
COL7A1Q02388 AC097488.1-201ENST00000507834 756 ntBASIC14.41□□□□□ -0.1
COL7A1Q02388 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.41□□□□□ -0.1
COL7A1Q02388 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.41□□□□□ -0.1
COL7A1Q02388 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.41□□□□□ -0.1
COL7A1Q02388 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL7A1Q02388 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC14.4□□□□□ -0.1
COL7A1Q02388 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL7A1Q02388 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.4□□□□□ -0.1
COL7A1Q02388 HMGA1P5-201ENST00000412453 271 ntBASIC14.4□□□□□ -0.1
COL7A1Q02388 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC14.4□□□□□ -0.1
COL7A1Q02388 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.4□□□□□ -0.1
COL7A1Q02388 AL138966.2-201ENST00000621997 464 ntBASIC14.4□□□□□ -0.1
COL7A1Q02388 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.4□□□□□ -0.1
COL7A1Q02388 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 AC127496.7-201ENST00000625110 1798 ntBASIC14.4□□□□□ -0.1
COL7A1Q02388 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
COL7A1Q02388 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL7A1Q02388 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.4□□□□□ -0.1
COL7A1Q02388 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL7A1Q02388 FSCN1P1-201ENST00000568912 1481 ntBASIC14.4□□□□□ -0.1
COL7A1Q02388 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
COL7A1Q02388 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL7A1Q02388 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.4□□□□□ -0.1
COL7A1Q02388 ME2-208ENST00000638937 2471 ntTSL 5 BASIC14.39□□□□□ -0.11
COL7A1Q02388 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC14.39□□□□□ -0.11
COL7A1Q02388 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC14.39□□□□□ -0.11
COL7A1Q02388 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC14.39□□□□□ -0.11
COL7A1Q02388 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL7A1Q02388 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL7A1Q02388 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
COL7A1Q02388 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL7A1Q02388 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
COL7A1Q02388 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL7A1Q02388 AC011506.1-201ENST00000474329 610 ntBASIC14.39□□□□□ -0.11
COL7A1Q02388 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL7A1Q02388 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.39□□□□□ -0.11
COL7A1Q02388 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.39□□□□□ -0.11
COL7A1Q02388 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL7A1Q02388 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL7A1Q02388 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC14.39□□□□□ -0.11
COL7A1Q02388 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.38□□□□□ -0.11
COL7A1Q02388 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 AC092647.4-201ENST00000457211 535 ntBASIC14.38□□□□□ -0.11
COL7A1Q02388 AL671277.2-201ENST00000458060 996 ntBASIC14.38□□□□□ -0.11
COL7A1Q02388 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC14.38□□□□□ -0.11
COL7A1Q02388 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC14.38□□□□□ -0.11
COL7A1Q02388 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC14.38□□□□□ -0.11
COL7A1Q02388 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.38□□□□□ -0.11
COL7A1Q02388 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC14.38□□□□□ -0.11
COL7A1Q02388 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.38□□□□□ -0.11
COL7A1Q02388 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL7A1Q02388 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
COL7A1Q02388 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.38□□□□□ -0.11
COL7A1Q02388 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC14.38□□□□□ -0.11
COL7A1Q02388 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL7A1Q02388 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL7A1Q02388 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.38□□□□□ -0.11
COL7A1Q02388 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.38□□□□□ -0.11
COL7A1Q02388 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL7A1Q02388 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL7A1Q02388 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL7A1Q02388 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC14.37□□□□□ -0.11
COL7A1Q02388 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL7A1Q02388 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL7A1Q02388 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL7A1Q02388 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL7A1Q02388 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL7A1Q02388 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.37□□□□□ -0.11
COL7A1Q02388 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL7A1Q02388 PCED1CP-201ENST00000419887 785 ntBASIC14.37□□□□□ -0.11
COL7A1Q02388 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC14.37□□□□□ -0.11
COL7A1Q02388 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms