Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
FOXA1P55317 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 MCRIP2P1-201ENST00000394346 511 ntBASIC19.34■□□□□ 0.69
FOXA1P55317 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.34■□□□□ 0.69
FOXA1P55317 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.34■□□□□ 0.69
FOXA1P55317 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
FOXA1P55317 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.34■□□□□ 0.69
FOXA1P55317 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
FOXA1P55317 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
FOXA1P55317 AC098818.2-201ENST00000564925 2320 ntBASIC19.34■□□□□ 0.69
FOXA1P55317 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.34■□□□□ 0.69
FOXA1P55317 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
FOXA1P55317 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA1P55317 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA1P55317 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA1P55317 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
FOXA1P55317 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA1P55317 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
FOXA1P55317 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.33■□□□□ 0.69
FOXA1P55317 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA1P55317 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
FOXA1P55317 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.33■□□□□ 0.68
FOXA1P55317 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
FOXA1P55317 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.33■□□□□ 0.68
FOXA1P55317 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.33■□□□□ 0.68
FOXA1P55317 AC005332.7-201ENST00000614046 2005 ntBASIC19.33■□□□□ 0.68
FOXA1P55317 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.33■□□□□ 0.68
FOXA1P55317 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
FOXA1P55317 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 KRT8P17-201ENST00000453110 1448 ntBASIC19.33■□□□□ 0.68
FOXA1P55317 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
FOXA1P55317 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
FOXA1P55317 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
FOXA1P55317 AC016769.1-201ENST00000409132 1010 ntBASIC19.32■□□□□ 0.68
FOXA1P55317 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.32■□□□□ 0.68
FOXA1P55317 AC026271.2-201ENST00000428091 497 ntBASIC19.32■□□□□ 0.68
FOXA1P55317 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.32■□□□□ 0.68
FOXA1P55317 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.32■□□□□ 0.68
FOXA1P55317 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.32■□□□□ 0.68
FOXA1P55317 AC100791.3-201ENST00000617619 330 ntBASIC19.32■□□□□ 0.68
FOXA1P55317 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
FOXA1P55317 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.32■□□□□ 0.68
FOXA1P55317 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
FOXA1P55317 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
FOXA1P55317 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.32■□□□□ 0.68
FOXA1P55317 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
FOXA1P55317 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.31■□□□□ 0.68
FOXA1P55317 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.31■□□□□ 0.68
FOXA1P55317 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.31■□□□□ 0.68
FOXA1P55317 AC006015.1-201ENST00000429970 570 ntBASIC19.31■□□□□ 0.68
FOXA1P55317 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.31■□□□□ 0.68
FOXA1P55317 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
FOXA1P55317 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.31■□□□□ 0.68
FOXA1P55317 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.31■□□□□ 0.68
FOXA1P55317 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.31■□□□□ 0.68
FOXA1P55317 AC105020.6-201ENST00000621523 1217 ntBASIC19.31■□□□□ 0.68
FOXA1P55317 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
FOXA1P55317 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
FOXA1P55317 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.3■□□□□ 0.68
FOXA1P55317 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.3■□□□□ 0.68
FOXA1P55317 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.3■□□□□ 0.68
FOXA1P55317 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.3■□□□□ 0.68
FOXA1P55317 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
FOXA1P55317 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
FOXA1P55317 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms