Protein–RNA interactions for Protein: P38959

VPS41, Vacuolar protein sorting-associated protein 41, yeastyeast

Predictions only

Length 992 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS41P38959 YML002WYML002W 2214 nt1.19□□□□□ -2.22
VPS41P38959 YFR012W-AYFR012W-A 87 nt1.18□□□□□ -2.22
VPS41P38959 YGR164WYGR164W 336 nt1.18□□□□□ -2.22
VPS41P38959 YOR102WYOR102W 351 nt1.18□□□□□ -2.22
VPS41P38959 SCC2YDR180W 4482 nt1.18□□□□□ -2.22
VPS41P38959 NUP157YER105C 4176 nt1.17□□□□□ -2.22
VPS41P38959 YPR117WYPR117W 7470 nt1.16□□□□□ -2.22
VPS41P38959 BFR2YDR299W 1605 nt1.15□□□□□ -2.22
VPS41P38959 SNU13YEL026W 381 nt1.15□□□□□ -2.23
VPS41P38959 snR190snR190 190 nt1.15□□□□□ -2.23
VPS41P38959 SDH6YDR379C-A 240 nt1.14□□□□□ -2.23
VPS41P38959 YCS4YLR272C 3531 nt1.14□□□□□ -2.23
VPS41P38959 YGL182CYGL182C 324 nt1.13□□□□□ -2.23
VPS41P38959 DOP1YDR141C 5097 nt1.13□□□□□ -2.23
VPS41P38959 FYV10YIL097W 1551 nt1.13□□□□□ -2.23
VPS41P38959 YJR029WYJR029W 5268 nt1.12□□□□□ -2.23
VPS41P38959 YPR137C-BYPR137C-B 5268 nt1.12□□□□□ -2.23
VPS41P38959 TAH1YCR060W 336 nt1.11□□□□□ -2.23
VPS41P38959 YOR314W-AYOR314W-A 111 nt1.11□□□□□ -2.23
VPS41P38959 STB6YKL072W 2301 nt1.11□□□□□ -2.23
VPS41P38959 PRP16YKR086W 3216 nt1.11□□□□□ -2.23
VPS41P38959 CHS6YJL099W 2241 nt1.09□□□□□ -2.23
VPS41P38959 CDC39YCR093W 6327 nt1.08□□□□□ -2.24
VPS41P38959 YBL039C-AYBL039C-A 84 nt1.08□□□□□ -2.24
VPS41P38959 snR48snR48 113 nt1.08□□□□□ -2.24
VPS41P38959 SIP4YJL089W 2490 nt1.06□□□□□ -2.24
VPS41P38959 IML1YJR138W 4755 nt1.06□□□□□ -2.24
VPS41P38959 tL(UAA)QtL(UAA)Q 85 nt1.06□□□□□ -2.24
VPS41P38959 EMT1tM(CAU)D 73 nt1.06□□□□□ -2.24
VPS41P38959 EMT5tM(CAU)J1 73 nt1.06□□□□□ -2.24
VPS41P38959 EMT3tM(CAU)J2 73 nt1.06□□□□□ -2.24
VPS41P38959 EMT4tM(CAU)M 73 nt1.06□□□□□ -2.24
VPS41P38959 EMT2tM(CAU)O2 73 nt1.06□□□□□ -2.24
VPS41P38959 YLR232WYLR232W 348 nt1.06□□□□□ -2.24
VPS41P38959 SEC8YPR055W 3198 nt1.06□□□□□ -2.24
VPS41P38959 BEM3YPL115C 3387 nt1.05□□□□□ -2.24
VPS41P38959 tV(UAC)BtV(UAC)B 74 nt1.05□□□□□ -2.24
VPS41P38959 tV(UAC)DtV(UAC)D 74 nt1.05□□□□□ -2.24
VPS41P38959 YLR041WYLR041W 321 nt1.04□□□□□ -2.24
VPS41P38959 ASE1YOR058C 2658 nt1.04□□□□□ -2.24
VPS41P38959 BUD3YCL014W 4911 nt1.04□□□□□ -2.24
VPS41P38959 YGR130CYGR130C 2451 nt1.04□□□□□ -2.24
VPS41P38959 ROM2YLR371W 4071 nt1.03□□□□□ -2.24
VPS41P38959 YDR544CYDR544C 429 nt1.03□□□□□ -2.24
VPS41P38959 YOR329W-AYOR329W-A 210 nt1.03□□□□□ -2.24
VPS41P38959 KAP120YPL125W 3099 nt1.03□□□□□ -2.24
VPS41P38959 YDL073WYDL073W 2955 nt1.02□□□□□ -2.25
VPS41P38959 tM(CAU)Q2tM(CAU)Q2 78 nt1.01□□□□□ -2.25
VPS41P38959 YLR399W-AYLR399W-A 105 nt1.01□□□□□ -2.25
VPS41P38959 QCR9YGR183C 201 nt1□□□□□ -2.25
VPS41P38959 YHR131W-AYHR131W-A 246 nt0.99□□□□□ -2.25
VPS41P38959 YPR160W-AYPR160W-A 81 nt0.99□□□□□ -2.25
VPS41P38959 tN(GUU)QtN(GUU)Q 71 nt0.98□□□□□ -2.25
VPS41P38959 YCL001W-BYCL001W-B 255 nt0.98□□□□□ -2.25
VPS41P38959 YNL067W-BYNL067W-B 141 nt0.97□□□□□ -2.25
VPS41P38959 UBP3YER151C 2739 nt0.96□□□□□ -2.26
VPS41P38959 PAU24YBR301W 363 nt0.94□□□□□ -2.26
VPS41P38959 snR39BsnR39B 96 nt0.93□□□□□ -2.26
VPS41P38959 COG6YNL041C 2520 nt0.91□□□□□ -2.26
VPS41P38959 YSP1YHR155W 3687 nt0.91□□□□□ -2.26
VPS41P38959 YDR210WYDR210W 228 nt0.9□□□□□ -2.27
VPS41P38959 SOM1YEL059C-A 225 nt0.9□□□□□ -2.27
VPS41P38959 YJL127W-AYJL127W-A 117 nt0.9□□□□□ -2.27
VPS41P38959 RKR1YMR247C 4689 nt0.88□□□□□ -2.27
VPS41P38959 OST4YDL232W 111 nt0.88□□□□□ -2.27
VPS41P38959 YBR072C-AYBR072C-A 162 nt0.88□□□□□ -2.27
VPS41P38959 YCR095W-AYCR095W-A 159 nt0.87□□□□□ -2.27
VPS41P38959 YBR099CYBR099C 384 nt0.87□□□□□ -2.27
VPS41P38959 Q0143Q0143 153 nt0.85□□□□□ -2.27
VPS41P38959 YIL071W-AYIL071W-A 477 nt0.82□□□□□ -2.28
VPS41P38959 YNL205CYNL205C 423 nt0.82□□□□□ -2.28
VPS41P38959 GLG1YKR058W 1851 nt0.82□□□□□ -2.28
VPS41P38959 SEC1YDR164C 2175 nt0.81□□□□□ -2.28
VPS41P38959 YPR159C-AYPR159C-A 102 nt0.81□□□□□ -2.28
VPS41P38959 snR85snR85 171 nt0.8□□□□□ -2.28
VPS41P38959 YGR146C-AYGR146C-A 162 nt0.8□□□□□ -2.28
VPS41P38959 YLL006W-AYLL006W-A 177 nt0.8□□□□□ -2.28
VPS41P38959 CSE1YGL238W 2883 nt0.8□□□□□ -2.28
VPS41P38959 NNF2YGR089W 2811 nt0.79□□□□□ -2.28
VPS41P38959 PMP2YEL017C-A 132 nt0.76□□□□□ -2.29
VPS41P38959 ULP2YIL031W 3105 nt0.75□□□□□ -2.29
VPS41P38959 YOR192C-BYOR192C-B 5313 nt0.75□□□□□ -2.29
VPS41P38959 STF2YGR008C 255 nt0.73□□□□□ -2.29
VPS41P38959 HUG1YML058W-A 207 nt0.73□□□□□ -2.29
VPS41P38959 PET111YMR257C 2403 nt0.72□□□□□ -2.29
VPS41P38959 YMR272W-AYMR272W-A 114 nt0.71□□□□□ -2.3
VPS41P38959 BIR1YJR089W 2865 nt0.7□□□□□ -2.3
VPS41P38959 YNL266WYNL266W 420 nt0.69□□□□□ -2.3
VPS41P38959 NIP1YMR309C 2439 nt0.66□□□□□ -2.3
VPS41P38959 YIL142C-AYIL142C-A 333 nt0.66□□□□□ -2.3
VPS41P38959 YNL103W-AYNL103W-A 90 nt0.66□□□□□ -2.3
VPS41P38959 YBR178WYBR178W 375 nt0.66□□□□□ -2.3
VPS41P38959 tT(AGU)BtT(AGU)B 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)CtT(AGU)C 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)DtT(AGU)D 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)HtT(AGU)H 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)I1tT(AGU)I1 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)I2tT(AGU)I2 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)JtT(AGU)J 73 nt0.65□□□□□ -2.31
VPS41P38959 tT(AGU)N1tT(AGU)N1 73 nt0.65□□□□□ -2.31
Retrieved 100 of 7,029 protein–RNA pairs in 70.2 ms