Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.09■□□□□ 0.97
BDNFP23560 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.09■□□□□ 0.97
BDNFP23560 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
BDNFP23560 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.09■□□□□ 0.97
BDNFP23560 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.09■□□□□ 0.97
BDNFP23560 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.09■□□□□ 0.97
BDNFP23560 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.09■□□□□ 0.97
BDNFP23560 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.09■□□□□ 0.97
BDNFP23560 AC020907.5-201ENST00000624372 1936 ntBASIC21.09■□□□□ 0.97
BDNFP23560 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
BDNFP23560 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
BDNFP23560 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
BDNFP23560 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BDNFP23560 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
BDNFP23560 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
BDNFP23560 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
BDNFP23560 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BDNFP23560 KRASP1-201ENST00000407852 552 ntBASIC21.08■□□□□ 0.97
BDNFP23560 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
BDNFP23560 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.08■□□□□ 0.97
BDNFP23560 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.08■□□□□ 0.97
BDNFP23560 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC21.08■□□□□ 0.97
BDNFP23560 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.08■□□□□ 0.97
BDNFP23560 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.08■□□□□ 0.97
BDNFP23560 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.08■□□□□ 0.97
BDNFP23560 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
BDNFP23560 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.08■□□□□ 0.97
BDNFP23560 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
BDNFP23560 AL121829.2-201ENST00000620908 328 ntBASIC21.08■□□□□ 0.97
BDNFP23560 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
BDNFP23560 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
BDNFP23560 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BDNFP23560 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.08■□□□□ 0.96
BDNFP23560 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
BDNFP23560 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.07■□□□□ 0.96
BDNFP23560 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.07■□□□□ 0.96
BDNFP23560 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
BDNFP23560 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
BDNFP23560 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.07■□□□□ 0.96
BDNFP23560 PRKY-204ENST00000533551 1019 ntBASIC21.07■□□□□ 0.96
BDNFP23560 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.07■□□□□ 0.96
BDNFP23560 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.07■□□□□ 0.96
BDNFP23560 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
BDNFP23560 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.07■□□□□ 0.96
BDNFP23560 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.07■□□□□ 0.96
BDNFP23560 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.07■□□□□ 0.96
BDNFP23560 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.06■□□□□ 0.96
BDNFP23560 AC133681.1-201ENST00000465482 601 ntBASIC21.06■□□□□ 0.96
BDNFP23560 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
BDNFP23560 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.06■□□□□ 0.96
BDNFP23560 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.06■□□□□ 0.96
BDNFP23560 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.06■□□□□ 0.96
BDNFP23560 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.06■□□□□ 0.96
BDNFP23560 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.06■□□□□ 0.96
BDNFP23560 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.06■□□□□ 0.96
BDNFP23560 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
BDNFP23560 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
BDNFP23560 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.06■□□□□ 0.96
BDNFP23560 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
BDNFP23560 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.05■□□□□ 0.96
BDNFP23560 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
BDNFP23560 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
BDNFP23560 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms