Protein–RNA interactions for Protein: P0CH08

RPL40A, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40AP0CH08 VPS20YMR077C 666 nt-0.78□□□□□ -2.53
RPL40AP0CH08 CSE2YNR010W 450 nt-0.8□□□□□ -2.54
RPL40AP0CH08 YNL067W-BYNL067W-B 141 nt-0.81□□□□□ -2.54
RPL40AP0CH08 SDH6YDR379C-A 240 nt-0.82□□□□□ -2.54
RPL40AP0CH08 RPS27BYHR021C 249 nt-0.82□□□□□ -2.54
RPL40AP0CH08 YFL063WYFL063W 456 nt-0.83□□□□□ -2.54
RPL40AP0CH08 YDL007C-AYDL007C-A 258 nt-0.84□□□□□ -2.54
RPL40AP0CH08 STE18YJR086W 333 nt-0.84□□□□□ -2.54
RPL40AP0CH08 YLR264C-AYLR264C-A 117 nt-0.84□□□□□ -2.54
RPL40AP0CH08 CSN9YDR179C 489 nt-0.85□□□□□ -2.55
RPL40AP0CH08 snR41snR41 95 nt-0.85□□□□□ -2.55
RPL40AP0CH08 PAU9YBL108C-A 129 nt-0.86□□□□□ -2.55
RPL40AP0CH08 tA(UGC)QtA(UGC)Q 76 nt-0.87□□□□□ -2.55
RPL40AP0CH08 YMR193C-AYMR193C-A 387 nt-0.87□□□□□ -2.55
RPL40AP0CH08 snR33snR33 183 nt-0.87□□□□□ -2.55
RPL40AP0CH08 YER053C-AYER053C-A 114 nt-0.89□□□□□ -2.55
RPL40AP0CH08 YNL122CYNL122C 348 nt-0.89□□□□□ -2.55
RPL40AP0CH08 TOM22YNL131W 459 nt-0.9□□□□□ -2.55
RPL40AP0CH08 YOL166W-AYOL166W-A 156 nt-0.9□□□□□ -2.55
RPL40AP0CH08 YLL019W-AYLL019W-A 93 nt-0.91□□□□□ -2.56
RPL40AP0CH08 YIL002W-AYIL002W-A 210 nt-0.92□□□□□ -2.56
RPL40AP0CH08 YJL197C-AYJL197C-A 282 nt-0.92□□□□□ -2.56
RPL40AP0CH08 YER079WYER079W 633 nt-0.94□□□□□ -2.56
RPL40AP0CH08 YIL115W-AYIL115W-A 372 nt-0.94□□□□□ -2.56
RPL40AP0CH08 YHL009W-BYHL009W-B 5409 nt-0.95□□□□□ -2.56
RPL40AP0CH08 APQ12YIL040W 417 nt-0.95□□□□□ -2.56
RPL40AP0CH08 YML100W-AYML100W-A 174 nt-0.95□□□□□ -2.56
RPL40AP0CH08 YOR015WYOR015W 360 nt-0.96□□□□□ -2.56
RPL40AP0CH08 YGR069WYGR069W 336 nt-0.98□□□□□ -2.57
RPL40AP0CH08 YDR544CYDR544C 429 nt-0.99□□□□□ -2.57
RPL40AP0CH08 YLR434CYLR434C 384 nt-1□□□□□ -2.57
RPL40AP0CH08 tR(UCU)Q1tR(UCU)Q1 73 nt-1.01□□□□□ -2.57
RPL40AP0CH08 YDR048CYDR048C 315 nt-1.02□□□□□ -2.57
RPL40AP0CH08 YNR025CYNR025C 360 nt-1.02□□□□□ -2.57
RPL40AP0CH08 YOR072W-BYOR072W-B 162 nt-1.02□□□□□ -2.57
RPL40AP0CH08 YER137W-AYER137W-A 306 nt-1.04□□□□□ -2.58
RPL40AP0CH08 YJL182CYJL182C 318 nt-1.05□□□□□ -2.58
RPL40AP0CH08 YGL052WYGL052W 306 nt-1.06□□□□□ -2.58
RPL40AP0CH08 YOL013W-BYOL013W-B 291 nt-1.06□□□□□ -2.58
RPL40AP0CH08 snR49snR49 165 nt-1.07□□□□□ -2.58
RPL40AP0CH08 YPR010C-AYPR010C-A 219 nt-1.09□□□□□ -2.58
RPL40AP0CH08 YPR016W-AYPR016W-A 261 nt-1.09□□□□□ -2.58
RPL40AP0CH08 snR60snR60 104 nt-1.1□□□□□ -2.59
RPL40AP0CH08 HMRA1YCR097W 381 nt-1.1□□□□□ -2.59
RPL40AP0CH08 YJL077W-AYJL077W-A 87 nt-1.1□□□□□ -2.59
RPL40AP0CH08 tQ(UUG)QtQ(UUG)Q 76 nt-1.12□□□□□ -2.59
RPL40AP0CH08 snR78snR78 87 nt-1.14□□□□□ -2.59
RPL40AP0CH08 YDL158CYDL158C 309 nt-1.14□□□□□ -2.59
RPL40AP0CH08 tW(UCA)QtW(UCA)Q 74 nt-1.14□□□□□ -2.59
RPL40AP0CH08 YLR202CYLR202C 327 nt-1.14□□□□□ -2.59
RPL40AP0CH08 YMR001C-AYMR001C-A 231 nt-1.16□□□□□ -2.6
RPL40AP0CH08 YAF9YNL107W 681 nt-1.16□□□□□ -2.6
RPL40AP0CH08 YLR406C-AYLR406C-A 150 nt-1.17□□□□□ -2.6
RPL40AP0CH08 YOR121CYOR121C 306 nt-1.18□□□□□ -2.6
RPL40AP0CH08 BIL1YOR304C-A 231 nt-1.18□□□□□ -2.6
RPL40AP0CH08 YGL182CYGL182C 324 nt-1.19□□□□□ -2.6
RPL40AP0CH08 YOR314W-AYOR314W-A 111 nt-1.19□□□□□ -2.6
RPL40AP0CH08 YML099W-AYML099W-A 330 nt-1.2□□□□□ -2.6
RPL40AP0CH08 YGL149WYGL149W 306 nt-1.21□□□□□ -2.6
RPL40AP0CH08 YBL039C-AYBL039C-A 84 nt-1.21□□□□□ -2.6
RPL40AP0CH08 YLR154W-FYLR154W-F 141 nt-1.22□□□□□ -2.6
RPL40AP0CH08 YKL063CYKL063C 504 nt-1.23□□□□□ -2.61
RPL40AP0CH08 YNL028WYNL028W 318 nt-1.23□□□□□ -2.61
RPL40AP0CH08 YBR285WYBR285W 435 nt-1.23□□□□□ -2.61
RPL40AP0CH08 YIL032CYIL032C 357 nt-1.24□□□□□ -2.61
RPL40AP0CH08 ATP19YOL077W-A 207 nt-1.26□□□□□ -2.61
RPL40AP0CH08 YNL324WYNL324W 396 nt-1.27□□□□□ -2.61
RPL40AP0CH08 YOR170WYOR170W 306 nt-1.29□□□□□ -2.62
RPL40AP0CH08 YEL050W-AYEL050W-A 192 nt-1.3□□□□□ -2.62
RPL40AP0CH08 snR69snR69 101 nt-1.31□□□□□ -2.62
RPL40AP0CH08 YER090C-AYER090C-A 90 nt-1.31□□□□□ -2.62
RPL40AP0CH08 tP(UGG)QtP(UGG)Q 72 nt-1.32□□□□□ -2.62
RPL40AP0CH08 HTL1YCR020W-B 237 nt-1.33□□□□□ -2.62
RPL40AP0CH08 YDR102CYDR102C 333 nt-1.33□□□□□ -2.62
RPL40AP0CH08 snR74snR74 88 nt-1.34□□□□□ -2.62
RPL40AP0CH08 ATP6Q0085 780 nt-1.35□□□□□ -2.63
RPL40AP0CH08 YNL266WYNL266W 420 nt-1.35□□□□□ -2.63
RPL40AP0CH08 snR50snR50 90 nt-1.35□□□□□ -2.63
RPL40AP0CH08 YFL032WYFL032W 321 nt-1.36□□□□□ -2.63
RPL40AP0CH08 SKI7YOR076C 2244 nt-1.37□□□□□ -2.63
RPL40AP0CH08 Q0142Q0142 177 nt-1.37□□□□□ -2.63
RPL40AP0CH08 YLR120W-AYLR120W-A 102 nt-1.38□□□□□ -2.63
RPL40AP0CH08 YAL063C-AYAL063C-A 291 nt-1.39□□□□□ -2.63
RPL40AP0CH08 RDS3YPR094W 324 nt-1.39□□□□□ -2.63
RPL40AP0CH08 YER097WYER097W 330 nt-1.4□□□□□ -2.63
RPL40AP0CH08 JLP2YMR132C 627 nt-1.4□□□□□ -2.63
RPL40AP0CH08 YGR035CYGR035C 351 nt-1.41□□□□□ -2.64
RPL40AP0CH08 tM(CAU)Q2tM(CAU)Q2 78 nt-1.42□□□□□ -2.64
RPL40AP0CH08 YGL041CYGL041C 204 nt-1.46□□□□□ -2.64
RPL40AP0CH08 YAL068W-AYAL068W-A 255 nt-1.47□□□□□ -2.64
RPL40AP0CH08 snR67snR67 82 nt-1.48□□□□□ -2.65
RPL40AP0CH08 PMP2YEL017C-A 132 nt-1.48□□□□□ -2.65
RPL40AP0CH08 YDR543CYDR543C 300 nt-1.49□□□□□ -2.65
RPL40AP0CH08 snR189snR189 189 nt-1.49□□□□□ -2.65
RPL40AP0CH08 snR39BsnR39B 96 nt-1.5□□□□□ -2.65
RPL40AP0CH08 YMR172C-AYMR172C-A 384 nt-1.51□□□□□ -2.65
RPL40AP0CH08 YGR146C-AYGR146C-A 162 nt-1.52□□□□□ -2.65
RPL40AP0CH08 YOR381W-AYOR381W-A 168 nt-1.54□□□□□ -2.66
RPL40AP0CH08 YOR293C-AYOR293C-A 150 nt-1.56□□□□□ -2.66
RPL40AP0CH08 YDR183C-AYDR183C-A 258 nt-1.59□□□□□ -2.66
Retrieved 100 of 7,029 protein–RNA pairs in 104.7 ms