Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CTDNEP1O95476 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CTDNEP1O95476 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.2■■□□□ 1.3
CTDNEP1O95476 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.2■■□□□ 1.3
CTDNEP1O95476 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CTDNEP1O95476 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.2■■□□□ 1.3
CTDNEP1O95476 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CTDNEP1O95476 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CTDNEP1O95476 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTDNEP1O95476 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTDNEP1O95476 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTDNEP1O95476 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 DUSP5P2-201ENST00000426873 1033 ntBASIC23.19■■□□□ 1.3
CTDNEP1O95476 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CTDNEP1O95476 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CTDNEP1O95476 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 AC098934.4-201ENST00000564127 592 ntBASIC23.19■■□□□ 1.3
CTDNEP1O95476 AC092118.2-201ENST00000613495 667 ntBASIC23.19■■□□□ 1.3
CTDNEP1O95476 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.19■■□□□ 1.3
CTDNEP1O95476 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTDNEP1O95476 TREX1-205ENST00000625293 1783 ntBASIC23.19■■□□□ 1.3
CTDNEP1O95476 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTDNEP1O95476 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 NME6-213ENST00000451657 871 ntTSL 2 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.18■■□□□ 1.3
CTDNEP1O95476 AC009237.14-201ENST00000609975 1594 ntBASIC23.18■■□□□ 1.3
CTDNEP1O95476 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTDNEP1O95476 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CTDNEP1O95476 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTDNEP1O95476 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CTDNEP1O95476 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC23.17■■□□□ 1.3
CTDNEP1O95476 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 KRT16P6-202ENST00000425692 1426 ntBASIC23.16■■□□□ 1.3
CTDNEP1O95476 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CTDNEP1O95476 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.16■■□□□ 1.3
CTDNEP1O95476 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.16■■□□□ 1.3
CTDNEP1O95476 AC091874.3-201ENST00000512672 1195 ntBASIC23.16■■□□□ 1.3
CTDNEP1O95476 AL138781.1-201ENST00000566567 1274 ntBASIC23.16■■□□□ 1.3
CTDNEP1O95476 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CTDNEP1O95476 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC23.16■■□□□ 1.3
CTDNEP1O95476 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CTDNEP1O95476 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 MYC-209ENST00000641252 345 ntBASIC23.15■■□□□ 1.3
CTDNEP1O95476 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.15■■□□□ 1.3
CTDNEP1O95476 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTDNEP1O95476 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.14■■□□□ 1.3
CTDNEP1O95476 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CTDNEP1O95476 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms