Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LMX1BO60663 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LMX1BO60663 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1BO60663 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
LMX1BO60663 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1BO60663 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 MIPEPP3-201ENST00000412105 444 ntBASIC17.54■□□□□ 0.4
LMX1BO60663 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1BO60663 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1BO60663 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.54■□□□□ 0.4
LMX1BO60663 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1BO60663 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.54■□□□□ 0.4
LMX1BO60663 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LMX1BO60663 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LMX1BO60663 AL691432.2-201ENST00000607222 2038 ntBASIC17.54■□□□□ 0.4
LMX1BO60663 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.53■□□□□ 0.4
LMX1BO60663 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LMX1BO60663 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.53■□□□□ 0.4
LMX1BO60663 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LMX1BO60663 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.53■□□□□ 0.4
LMX1BO60663 AC068338.2-201ENST00000563278 1430 ntBASIC17.53■□□□□ 0.4
LMX1BO60663 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
LMX1BO60663 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LMX1BO60663 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1BO60663 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.53■□□□□ 0.4
LMX1BO60663 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.52■□□□□ 0.4
LMX1BO60663 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LMX1BO60663 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1BO60663 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.52■□□□□ 0.4
LMX1BO60663 CYP2T1P-201ENST00000432607 1285 ntBASIC17.52■□□□□ 0.4
LMX1BO60663 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
LMX1BO60663 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1BO60663 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1BO60663 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
LMX1BO60663 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LMX1BO60663 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1BO60663 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LMX1BO60663 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LMX1BO60663 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
LMX1BO60663 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LMX1BO60663 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LMX1BO60663 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.51■□□□□ 0.39
LMX1BO60663 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1BO60663 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.51■□□□□ 0.39
LMX1BO60663 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.51■□□□□ 0.39
LMX1BO60663 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1BO60663 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1BO60663 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LMX1BO60663 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1BO60663 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1BO60663 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LMX1BO60663 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1BO60663 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
LMX1BO60663 AC069236.1-201ENST00000604339 616 ntBASIC17.51■□□□□ 0.39
LMX1BO60663 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.51■□□□□ 0.39
LMX1BO60663 OR10C1-204ENST00000622521 1039 ntBASIC17.51■□□□□ 0.39
LMX1BO60663 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1BO60663 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LMX1BO60663 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LMX1BO60663 AC116562.4-201ENST00000641316 2276 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms