Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMIM28A0A1B0GU29 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 NBPF21P-201ENST00000425093 1451 ntBASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.48■■□□□ 1.03
SMIM28A0A1B0GU29 KRT16P6-202ENST00000425692 1426 ntBASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 AC020907.5-201ENST00000624372 1936 ntBASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 RPS2P55-201ENST00000397318 883 ntBASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 AC107956.1-201ENST00000494359 873 ntBASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.47■■□□□ 1.03
SMIM28A0A1B0GU29 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 AC073314.1-201ENST00000568729 2216 ntBASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 AC012618.2-201ENST00000428058 849 ntBASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 AC233702.5-201ENST00000584107 538 ntBASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMIM28A0A1B0GU29 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMIM28A0A1B0GU29 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 KRT16P5-201ENST00000455284 522 ntBASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 RARRES2P10-201ENST00000564312 460 ntBASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 MIR4497-201ENST00000583208 89 ntBASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
SMIM28A0A1B0GU29 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms