Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AL391380.1-201ENST00000439300 1432 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 KYNUP1-201ENST00000466683 1406 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 IFT22-201ENST00000315322 1130 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 SSX6-201ENST00000376932 562 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AL773545.3-201ENST00000414297 706 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC231533.2-201ENST00000419045 978 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AL691447.1-201ENST00000419456 387 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 GAPDHP46-201ENST00000424043 994 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 RBMY2JP-201ENST00000425544 1059 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AL604028.1-201ENST00000430643 598 ntTSL 2 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 PHBP4-201ENST00000437447 837 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC114755.4-201ENST00000439114 443 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC002553.1-201ENST00000442828 802 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AL139135.2-201ENST00000445040 433 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC244021.2-201ENST00000445260 529 ntTSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 RPL7P14-201ENST00000449851 741 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC022730.2-201ENST00000465359 452 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 RN7SL91P-201ENST00000469313 291 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 RN7SL705P-201ENST00000481678 294 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC008799.2-201ENST00000484429 647 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 BLNK-209ENST00000495266 440 ntTSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC107956.2-201ENST00000496042 454 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC120036.3-201ENST00000517826 292 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 HIGD1AP9-201ENST00000550710 279 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC025430.1-201ENST00000561324 498 ntTSL 3 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC015801.1-201ENST00000585651 153 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 MCM3AP-AS1-207ENST00000588753 589 ntTSL 4 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC010463.3-201ENST00000594077 500 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 AL390058.1-201ENST00000603834 629 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 STARD13-AS-240ENST00000609608 865 ntTSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 IL13-206ENST00000617259 498 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AIFM1-205ENST00000460436 1925 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 COQ10B-202ENST00000409010 1355 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC6.28□□□□□ -1.4
NKX3-1Q99801 AC110716.2-201ENST00000563865 3945 ntBASIC6.28□□□□□ -1.4
NKX3-1Q99801 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
NKX3-1Q99801 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC6.27□□□□□ -1.4
NKX3-1Q99801 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 DIO2-AS1-201ENST00000553979 1597 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 FADS2P1-201ENST00000611807 1446 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AL157713.1-201ENST00000379752 1531 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 RN7SKP63-201ENST00000363187 301 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 MIR181C-201ENST00000384881 110 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 SUMO2P13-201ENST00000403109 272 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 SLC25A5P7-201ENST00000406156 896 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 RN7SKP131-201ENST00000410698 301 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 SMC4P1-201ENST00000414479 527 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 GEMIN2P2-201ENST00000418195 715 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC015987.1-201ENST00000419211 804 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 SS18L2P1-201ENST00000445923 213 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 RPL24P8-201ENST00000446071 474 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AL022068.1-208ENST00000447250 1016 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 PRKG1-AS1-203ENST00000452247 886 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 MRPS21P1-201ENST00000453850 223 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AP001372.3-201ENST00000530510 609 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 OR7E87P-201ENST00000532397 929 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 OR5F2P-201ENST00000532761 941 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC006205.2-201ENST00000538943 373 ntTSL 2 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
NKX3-1Q99801 BMS1P15-201ENST00000554269 1141 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC012291.1-201ENST00000559666 429 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC092133.1-201ENST00000565828 719 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC105036.1-201ENST00000566222 271 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 LINC02180-201ENST00000566439 1010 ntTSL 3 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC060766.1-201ENST00000590824 627 ntBASIC6.27□□□□□ -1.41
NKX3-1Q99801 AL589743.4-201ENST00000610763 586 ntTSL 5 BASIC6.27□□□□□ -1.41
NKX3-1Q99801 AC135050.6-202ENST00000613584 392 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms