Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC6.27□□□□□ -1.41
SSX3Q99909 AC005839.1-201ENST00000624148 3213 ntBASIC6.27□□□□□ -1.41
SSX3Q99909 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
SSX3Q99909 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
SSX3Q99909 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
SSX3Q99909 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.26□□□□□ -1.41
SSX3Q99909 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC6.26□□□□□ -1.41
SSX3Q99909 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 AC132219.2-201ENST00000624416 2327 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC6.26□□□□□ -1.41
SSX3Q99909 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 IFT22-201ENST00000315322 1130 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 RNA5SP389-201ENST00000362610 115 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 RNA5SP226-201ENST00000362653 115 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 COX6A1P3-201ENST00000404167 293 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 RNU2-5P-201ENST00000410533 180 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC6.26□□□□□ -1.41
SSX3Q99909 PGAM1P3-201ENST00000420790 565 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC6.26□□□□□ -1.41
SSX3Q99909 MED15P9-201ENST00000424716 533 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 PHBP4-201ENST00000437447 837 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 AC005550.1-201ENST00000438923 312 ntTSL 2 BASIC6.26□□□□□ -1.41
SSX3Q99909 CYP2C56P-201ENST00000440076 291 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 FO393419.1-201ENST00000443746 355 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 AL357037.1-201ENST00000454758 322 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC6.26□□□□□ -1.41
SSX3Q99909 AC008676.1-202ENST00000520658 545 ntTSL 4 BASIC6.26□□□□□ -1.41
SSX3Q99909 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC6.26□□□□□ -1.41
SSX3Q99909 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC6.26□□□□□ -1.41
SSX3Q99909 KLRD1-210ENST00000543777 789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 AC016152.1-201ENST00000548344 521 ntTSL 3 BASIC6.26□□□□□ -1.41
SSX3Q99909 BMS1P16-201ENST00000556075 1147 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 ULK4P2-202ENST00000564187 492 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 PDCD6IPP2-205ENST00000565892 498 ntTSL 2 BASIC6.26□□□□□ -1.41
SSX3Q99909 AC244090.2-201ENST00000567614 792 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 MIR5705-201ENST00000579870 89 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 STARD6-204ENST00000584040 660 ntTSL 3 BASIC6.26□□□□□ -1.41
SSX3Q99909 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC6.26□□□□□ -1.41
SSX3Q99909 AL021918.1-201ENST00000603933 236 ntBASIC6.26□□□□□ -1.41
SSX3Q99909 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC6.26□□□□□ -1.41
SSX3Q99909 MALAT1-208ENST00000616527 572 ntTSL 3 BASIC6.26□□□□□ -1.41
SSX3Q99909 AC244196.5-201ENST00000617347 406 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SSX3Q99909 AL109954.1-201ENST00000619495 557 ntTSL 4 BASIC6.26□□□□□ -1.41
SSX3Q99909 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC6.26□□□□□ -1.41
SSX3Q99909 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.26□□□□□ -1.41
SSX3Q99909 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SSX3Q99909 TDRD12-201ENST00000421545 1317 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.25□□□□□ -1.41
SSX3Q99909 SYNPR-204ENST00000460711 2383 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SSX3Q99909 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SSX3Q99909 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SSX3Q99909 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 DAZ2-208ENST00000400493 3516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SSX3Q99909 PAGE4-201ENST00000218068 499 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SSX3Q99909 TMEM126B-201ENST00000358867 989 ntAPPRIS P3 TSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 MGST3-202ENST00000367884 716 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
SSX3Q99909 MXI1-204ENST00000369612 879 ntTSL 3 BASIC6.25□□□□□ -1.41
SSX3Q99909 PPCS-204ENST00000372562 966 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SSX3Q99909 BCL2L15-202ENST00000393316 1084 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SSX3Q99909 OR7E91P-201ENST00000400027 866 ntBASIC6.25□□□□□ -1.41
SSX3Q99909 KRT18P52-201ENST00000404956 846 ntBASIC6.25□□□□□ -1.41
SSX3Q99909 AL591846.2-201ENST00000425161 358 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC6.25□□□□□ -1.41
SSX3Q99909 AC000362.1-201ENST00000433725 425 ntBASIC6.25□□□□□ -1.41
SSX3Q99909 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 RPSAP49-201ENST00000445182 886 ntBASIC6.25□□□□□ -1.41
SSX3Q99909 HSD17B3-AS1-201ENST00000448857 1072 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 RPL22-208ENST00000497965 786 ntTSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 AC083902.1-201ENST00000508578 359 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 NR1I3-226ENST00000508740 977 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SSX3Q99909 EIF3KP1-201ENST00000513279 656 ntBASIC6.25□□□□□ -1.41
SSX3Q99909 IGLVIV-59-201ENST00000520218 250 ntBASIC6.25□□□□□ -1.41
SSX3Q99909 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC6.25□□□□□ -1.41
SSX3Q99909 FXYD5-207ENST00000541435 898 ntAPPRIS P2 TSL 2 BASIC6.25□□□□□ -1.41
SSX3Q99909 LINC02413-202ENST00000552353 898 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
SSX3Q99909 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC6.25□□□□□ -1.41
SSX3Q99909 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC6.25□□□□□ -1.41
SSX3Q99909 BOLA2P1-201ENST00000584794 232 ntBASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms