Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PTPRJ-AS1-201ENST00000533964 301 ntTSL 5 BASIC11.65□□□□□ -0.54
CUX1P39880 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC11.65□□□□□ -0.54
CUX1P39880 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC11.65□□□□□ -0.54
CUX1P39880 AL390037.1-201ENST00000610918 431 ntTSL 3 BASIC11.65□□□□□ -0.54
CUX1P39880 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC11.65□□□□□ -0.54
CUX1P39880 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
CUX1P39880 VLDLR-AS1-201ENST00000416826 3167 ntTSL 2 BASIC11.65□□□□□ -0.54
CUX1P39880 SLC33A1-202ENST00000392845 9217 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 ANKRD20A5P-201ENST00000431648 3556 ntBASIC11.65□□□□□ -0.54
CUX1P39880 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 ABHD3-205ENST00000578270 2080 ntTSL 5 BASIC11.65□□□□□ -0.54
CUX1P39880 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 AC004491.1-201ENST00000623029 1882 ntBASIC11.65□□□□□ -0.54
CUX1P39880 SRL-201ENST00000399609 4214 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 ABCF2-202ENST00000287844 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
CUX1P39880 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC11.65□□□□□ -0.54
CUX1P39880 MED6-212ENST00000615788 1700 ntTSL 5 BASIC11.65□□□□□ -0.54
CUX1P39880 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC11.65□□□□□ -0.54
CUX1P39880 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC11.65□□□□□ -0.55
CUX1P39880 AL021707.2-202ENST00000422408 1080 ntTSL 3 BASIC11.65□□□□□ -0.55
CUX1P39880 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC11.65□□□□□ -0.55
CUX1P39880 AC007679.3-201ENST00000434035 414 ntBASIC11.65□□□□□ -0.55
CUX1P39880 SDHCP3-201ENST00000445371 506 ntBASIC11.65□□□□□ -0.55
CUX1P39880 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC11.65□□□□□ -0.55
CUX1P39880 AC096743.1-201ENST00000485172 319 ntBASIC11.65□□□□□ -0.55
CUX1P39880 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC11.65□□□□□ -0.55
CUX1P39880 AC124891.1-201ENST00000536322 519 ntBASIC11.65□□□□□ -0.55
CUX1P39880 RPL41P2-201ENST00000544920 409 ntBASIC11.65□□□□□ -0.55
CUX1P39880 AL590032.1-201ENST00000604920 252 ntBASIC11.65□□□□□ -0.55
CUX1P39880 AC015982.1-201ENST00000608113 465 ntBASIC11.65□□□□□ -0.55
CUX1P39880 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC11.65□□□□□ -0.55
CUX1P39880 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC11.65□□□□□ -0.55
CUX1P39880 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC11.65□□□□□ -0.55
CUX1P39880 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC11.65□□□□□ -0.55
CUX1P39880 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC11.65□□□□□ -0.55
CUX1P39880 CASC19-232ENST00000641480 1244 ntBASIC11.65□□□□□ -0.55
CUX1P39880 CASC19-274ENST00000642018 970 ntBASIC11.65□□□□□ -0.55
CUX1P39880 OR1D2-203ENST00000641833 4887 ntAPPRIS P1 BASIC11.65□□□□□ -0.55
CUX1P39880 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC11.65□□□□□ -0.55
CUX1P39880 AL121949.2-201ENST00000403446 1548 ntBASIC11.65□□□□□ -0.55
CUX1P39880 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC11.65□□□□□ -0.55
CUX1P39880 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
CUX1P39880 ZNF806-201ENST00000438300 1774 ntBASIC11.64□□□□□ -0.55
CUX1P39880 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 PPFIA2-202ENST00000407050 3903 ntTSL 2 BASIC11.64□□□□□ -0.55
CUX1P39880 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC11.64□□□□□ -0.55
CUX1P39880 HLTF-208ENST00000494055 3633 ntAPPRIS P3 TSL 2 BASIC11.64□□□□□ -0.55
CUX1P39880 WDR75-201ENST00000314761 2701 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 ADCY10P1-203ENST00000567255 4569 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 ZG16-201ENST00000400752 3132 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CUX1P39880 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC11.64□□□□□ -0.55
CUX1P39880 FLG-AS1-202ENST00000392688 2995 ntTSL 2 BASIC11.64□□□□□ -0.55
CUX1P39880 YWHAZP6-201ENST00000399764 738 ntBASIC11.64□□□□□ -0.55
CUX1P39880 PRELID1P1-201ENST00000403549 660 ntBASIC11.64□□□□□ -0.55
CUX1P39880 FABP5P1-201ENST00000423401 411 ntBASIC11.64□□□□□ -0.55
CUX1P39880 AC093166.3-201ENST00000448785 303 ntBASIC11.64□□□□□ -0.55
CUX1P39880 MEF2AP1-201ENST00000454867 863 ntBASIC11.64□□□□□ -0.55
CUX1P39880 AC021006.1-201ENST00000489849 553 ntBASIC11.64□□□□□ -0.55
CUX1P39880 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC11.64□□□□□ -0.55
CUX1P39880 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC11.64□□□□□ -0.55
CUX1P39880 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC11.64□□□□□ -0.55
CUX1P39880 AC012175.1-201ENST00000603755 531 ntBASIC11.64□□□□□ -0.55
CUX1P39880 AC007255.2-201ENST00000604053 631 ntBASIC11.64□□□□□ -0.55
CUX1P39880 MIR6862-1-201ENST00000613016 70 ntBASIC11.64□□□□□ -0.55
CUX1P39880 MIR6862-2-201ENST00000614755 70 ntBASIC11.64□□□□□ -0.55
CUX1P39880 COL12A1-211ENST00000615798 11579 ntTSL 5 BASIC11.63□□□□□ -0.55
CUX1P39880 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC11.63□□□□□ -0.55
CUX1P39880 AC129502.1-201ENST00000623261 1654 ntBASIC11.63□□□□□ -0.55
CUX1P39880 CRNKL1-202ENST00000377340 4406 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 ENO1P4-201ENST00000416471 1785 ntBASIC11.63□□□□□ -0.55
CUX1P39880 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 ADAM10-201ENST00000260408 11431 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 DLG2-229ENST00000531015 2892 ntTSL 2 BASIC11.63□□□□□ -0.55
CUX1P39880 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
CUX1P39880 WDR44-202ENST00000371822 3877 ntTSL 2 BASIC11.63□□□□□ -0.55
CUX1P39880 LPAR1-202ENST00000374430 2993 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CUX1P39880 UBBP1-201ENST00000392399 473 ntBASIC11.63□□□□□ -0.55
CUX1P39880 SNORA11B-201ENST00000408175 129 ntBASIC11.63□□□□□ -0.55
CUX1P39880 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC11.63□□□□□ -0.55
CUX1P39880 RPSAP65-201ENST00000429660 595 ntBASIC11.63□□□□□ -0.55
CUX1P39880 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC11.63□□□□□ -0.55
CUX1P39880 UBBP5-201ENST00000446970 266 ntBASIC11.63□□□□□ -0.55
CUX1P39880 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC11.63□□□□□ -0.55
CUX1P39880 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC11.63□□□□□ -0.55
CUX1P39880 SNRPCP6-201ENST00000528310 210 ntBASIC11.63□□□□□ -0.55
CUX1P39880 NXPE2P1-201ENST00000543705 726 ntBASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms