Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC074344.1-201ENST00000512823 224 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AC098827.1-201ENST00000514630 667 ntBASIC8.1□□□□□ -1.11
MSX1P28360 Y_RNA.702-201ENST00000516843 96 ntBASIC8.1□□□□□ -1.11
MSX1P28360 ATM-209ENST00000526567 560 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 LINC01965-202ENST00000537492 552 ntTSL 4 BASIC8.1□□□□□ -1.11
MSX1P28360 AC073896.2-202ENST00000549860 437 ntTSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 AC004217.3-201ENST00000551552 878 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AC087477.5-201ENST00000558246 562 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 AC018618.1-202ENST00000559590 395 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 LSM3P5-201ENST00000566307 306 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AC015911.8-201ENST00000592517 560 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AC010618.3-203ENST00000595116 313 ntTSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 AL109930.1-201ENST00000606932 724 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 AL008726.1-201ENST00000607703 569 ntTSL 4 BASIC8.1□□□□□ -1.11
MSX1P28360 AC073869.3-201ENST00000609270 580 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 AC011297.1-201ENST00000620503 2110 ntBASIC8.1□□□□□ -1.11
MSX1P28360 AL355987.5-201ENST00000621585 411 ntBASIC8.1□□□□□ -1.11
MSX1P28360 ANAPC1-210ENST00000628342 450 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 EFHC1-226ENST00000636954 2129 ntTSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 AC114980.1-201ENST00000505668 3157 ntBASIC8.1□□□□□ -1.11
MSX1P28360 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 NBPF19-202ENST00000426482 2344 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC8.1□□□□□ -1.11
MSX1P28360 RNF212B-202ENST00000399910 1670 ntAPPRIS P2 TSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 DLG1-208ENST00000419354 3994 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 TCF7-202ENST00000378560 2929 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 LIMCH1-215ENST00000512632 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 NHLRC3-202ENST00000379600 3549 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 FAM120B-201ENST00000476287 5155 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 OXNAD1-207ENST00000606098 2288 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 ANXA2-204ENST00000451270 1435 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 CYP2C19-202ENST00000480405 1417 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 AL512310.11-201ENST00000611741 1837 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 MSS51-201ENST00000299432 2421 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 RBM18-201ENST00000417201 4974 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 HAUS6-201ENST00000380496 3756 ntTSL 2 BASIC8.1□□□□□ -1.11
MSX1P28360 MEIS1-216ENST00000560281 2773 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 CELF1-205ENST00000395292 2191 ntAPPRIS P4 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 PABPC4L-201ENST00000421491 4944 ntAPPRIS P1 TSL 3 BASIC8.1□□□□□ -1.11
MSX1P28360 NOS1-203ENST00000344089 4340 ntTSL 5 BASIC8.1□□□□□ -1.11
MSX1P28360 IL2RB-201ENST00000216223 4113 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
MSX1P28360 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 HS3ST5-202ENST00000411826 2744 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 ATP8A2P3-201ENST00000426792 1536 ntBASIC8.09□□□□□ -1.11
MSX1P28360 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 MAPK10-325ENST00000641537 2623 ntBASIC8.09□□□□□ -1.11
MSX1P28360 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 AL132640.2-201ENST00000559968 1698 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AL133384.2-201ENST00000623755 2954 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AL031123.3-201ENST00000623345 1837 ntBASIC8.09□□□□□ -1.11
MSX1P28360 OFCC1-201ENST00000316020 863 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 RNA5SP78-201ENST00000364622 118 ntBASIC8.09□□□□□ -1.11
MSX1P28360 HMGB1P39-201ENST00000366304 880 ntBASIC8.09□□□□□ -1.11
MSX1P28360 S100A7-201ENST00000368722 442 ntAPPRIS P1 TSL 3 BASIC8.09□□□□□ -1.11
MSX1P28360 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 Metazoa_SRP.7-201ENST00000392674 281 ntBASIC8.09□□□□□ -1.11
MSX1P28360 BECN1P2-201ENST00000407947 812 ntBASIC8.09□□□□□ -1.11
MSX1P28360 UBTFL2-201ENST00000411859 1191 ntBASIC8.09□□□□□ -1.11
MSX1P28360 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC8.09□□□□□ -1.11
MSX1P28360 AC012462.3-201ENST00000412951 131 ntTSL 3 BASIC8.09□□□□□ -1.11
MSX1P28360 BTF3P8-201ENST00000414577 526 ntBASIC8.09□□□□□ -1.11
MSX1P28360 OR6K4P-201ENST00000423179 955 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC8.09□□□□□ -1.11
MSX1P28360 RPSAP10-201ENST00000426103 878 ntBASIC8.09□□□□□ -1.11
MSX1P28360 RPL12P14-201ENST00000431782 490 ntBASIC8.09□□□□□ -1.11
MSX1P28360 RPL12P15-201ENST00000433385 499 ntBASIC8.09□□□□□ -1.11
MSX1P28360 MTND4LP16-201ENST00000440828 295 ntBASIC8.09□□□□□ -1.11
MSX1P28360 RPS27P5-201ENST00000444247 244 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC244505.3-201ENST00000454598 187 ntBASIC8.09□□□□□ -1.11
MSX1P28360 RPS7P10-201ENST00000464254 603 ntBASIC8.09□□□□□ -1.11
MSX1P28360 SETP11-201ENST00000473027 690 ntBASIC8.09□□□□□ -1.11
MSX1P28360 RN7SL239P-201ENST00000490061 300 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC096751.1-202ENST00000502691 1067 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC8.09□□□□□ -1.11
MSX1P28360 LECT2-203ENST00000512872 762 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 SEPT10P1-201ENST00000517342 1162 ntBASIC8.09□□□□□ -1.11
MSX1P28360 IGLV1-41-201ENST00000519790 406 ntBASIC8.09□□□□□ -1.11
MSX1P28360 IGLV3-7-201ENST00000522952 271 ntBASIC8.09□□□□□ -1.11
MSX1P28360 NAP1L1P1-201ENST00000524793 1063 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC8.09□□□□□ -1.11
MSX1P28360 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC8.09□□□□□ -1.11
MSX1P28360 PRSS58-201ENST00000547058 913 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
MSX1P28360 AC020892.2-201ENST00000557891 387 ntTSL 3 BASIC8.09□□□□□ -1.11
MSX1P28360 RN7SL670P-201ENST00000577235 294 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC8.09□□□□□ -1.11
MSX1P28360 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC8.09□□□□□ -1.11
MSX1P28360 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC8.09□□□□□ -1.11
MSX1P28360 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC8.09□□□□□ -1.11
MSX1P28360 WISP1-OT1-201ENST00000602893 642 ntBASIC8.09□□□□□ -1.11
MSX1P28360 AC096553.1-201ENST00000605169 829 ntBASIC8.09□□□□□ -1.11
MSX1P28360 OFCC1-217ENST00000611763 875 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms