Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL451048.1-201ENST00000413328 217 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC003071.2-201ENST00000423857 315 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 IGKV1OR2-2-201ENST00000451163 355 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC026336.1-201ENST00000466577 351 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC021074.2-201ENST00000468434 172 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 QTRT2-215ENST00000493014 1046 ntTSL 2 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 ZBED3-AS1-203ENST00000504506 702 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 LINC01606-205ENST00000519314 562 ntTSL 4 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AP000907.3-201ENST00000530733 322 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AP000757.2-201ENST00000531850 557 ntTSL 5 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 ETFBKMT-204ENST00000538391 1067 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AL133304.1-201ENST00000548199 549 ntTSL 4 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 SUPT16H-204ENST00000555943 915 ntTSL 2 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AL137802.2-201ENST00000562878 1110 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 MIR3137-201ENST00000577367 75 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 RPS11-203ENST00000596873 583 ntTSL 2 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC010719.1-201ENST00000602992 747 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC005518.2-201ENST00000603254 282 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 AC010320.5-201ENST00000619124 676 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 PFN1P2-202ENST00000621347 397 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 AP005242.3-201ENST00000623604 607 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
NKX3-1Q99801 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 GPR33-201ENST00000399285 1343 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NKX3-1Q99801 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 SYTL2-228ENST00000533892 1441 ntTSL 2 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 SLC2A3P2-201ENST00000331747 1480 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 ZNF812P-201ENST00000457674 1694 ntBASIC6.39□□□□□ -1.39
NKX3-1Q99801 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.39□□□□□ -1.39
NKX3-1Q99801 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 AP003471.1-202ENST00000319051 1988 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 AHSP-201ENST00000302312 524 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 RNU1-16P-201ENST00000365477 164 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 AC244452.1-201ENST00000413798 141 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 OR4A8-201ENST00000418689 945 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 SNX18P3-201ENST00000424993 835 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 AC079584.1-201ENST00000426716 464 ntTSL 3 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 KLF7-IT1-201ENST00000428777 655 ntTSL 2 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 RPL5P4-201ENST00000434805 886 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 AL049646.2-201ENST00000436848 258 ntTSL 2 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 AC007000.1-201ENST00000453064 794 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 RN7SL19P-201ENST00000462522 306 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 RN7SL12P-201ENST00000473849 290 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 AC084878.1-201ENST00000480555 648 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 RPL23AP82-208ENST00000496652 1112 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 NPY6R-201ENST00000503807 1112 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 ST13P6-201ENST00000522430 1102 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 RD3L-201ENST00000557640 1201 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 LRRC75A-AS1-220ENST00000579473 585 ntTSL 4 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 AP001542.1-201ENST00000591314 200 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 AC015911.3-201ENST00000592908 849 ntTSL 5 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 NUTM2B-AS1-209ENST00000596088 366 ntTSL 3 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 AC093503.1-202ENST00000598743 478 ntTSL 5 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 LINC00595-211ENST00000634735 535 ntTSL 3 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 EEF1A1P15-201ENST00000395772 1408 ntBASIC6.38□□□□□ -1.39
NKX3-1Q99801 SLC17A3-203ENST00000361703 1543 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 KIAA0753-207ENST00000572370 3263 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.38□□□□□ -1.39
NKX3-1Q99801 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
NKX3-1Q99801 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 CLK1-215ENST00000621181 1843 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 REG1CP-205ENST00000444841 1710 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
NKX3-1Q99801 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 CSNK2A3-201ENST00000528848 1416 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
NKX3-1Q99801 AL049869.1-201ENST00000556933 1402 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms