Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.91■□□□□ 0.78
VPS9D1Q9Y2B5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
VPS9D1Q9Y2B5 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS9D1Q9Y2B5 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS9D1Q9Y2B5 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS9D1Q9Y2B5 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.91■□□□□ 0.78
VPS9D1Q9Y2B5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 AL391422.3-201ENST00000603791 2761 ntBASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 AC023632.3-201ENST00000521633 145 ntBASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS9D1Q9Y2B5 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.78
VPS9D1Q9Y2B5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
VPS9D1Q9Y2B5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 KRT17P1-201ENST00000399211 1546 ntBASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS9D1Q9Y2B5 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 AC112907.3-201ENST00000577781 2400 ntBASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 AC006970.2-201ENST00000450065 779 ntBASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
VPS9D1Q9Y2B5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 AL121832.2-201ENST00000610979 668 ntBASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS9D1Q9Y2B5 AL050303.2-201ENST00000619798 666 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms