Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL049796.1-201ENST00000565336 1766 ntBASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 AC027702.1-201ENST00000563810 1770 ntBASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 CFL2-205ENST00000555765 632 ntTSL 2 BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 AC006011.2-201ENST00000621313 1158 ntBASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC38.24■■■■□ 3.71
SHROOM4Q9ULL8 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 USF2-205ENST00000594064 1179 ntTSL 2 BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 FEM1AP4-201ENST00000443167 1987 ntBASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC38.23■■■■□ 3.71
SHROOM4Q9ULL8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC38.22■■■■□ 3.71
SHROOM4Q9ULL8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 AC124283.5-201ENST00000624661 1809 ntBASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 AL390719.1-204ENST00000412397 1219 ntBASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC38.21■■■■□ 3.71
SHROOM4Q9ULL8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC38.2■■■■□ 3.71
SHROOM4Q9ULL8 AL137013.1-201ENST00000432946 1228 ntBASIC38.2■■■■□ 3.71
SHROOM4Q9ULL8 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC38.2■■■■□ 3.71
SHROOM4Q9ULL8 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC38.2■■■■□ 3.71
SHROOM4Q9ULL8 MYC-208ENST00000641036 567 ntBASIC38.2■■■■□ 3.71
SHROOM4Q9ULL8 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC38.2■■■■□ 3.71
SHROOM4Q9ULL8 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC38.2■■■■□ 3.71
SHROOM4Q9ULL8 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 AC116562.2-201ENST00000507042 360 ntBASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 AC087388.1-201ENST00000571370 1112 ntBASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 MIR2861-201ENST00000636310 90 ntBASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC38.19■■■■□ 3.7
SHROOM4Q9ULL8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 WWOX-216ENST00000569818 525 ntBASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
SHROOM4Q9ULL8 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 CYP2D8P-201ENST00000433633 1490 ntBASIC38.17■■■■□ 3.7
SHROOM4Q9ULL8 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms