Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.37■□□□□ 0.53
TIMP4Q99727 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 FP700111.2-201ENST00000619190 1892 ntBASIC18.37■□□□□ 0.53
TIMP4Q99727 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.37■□□□□ 0.53
TIMP4Q99727 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.37■□□□□ 0.53
TIMP4Q99727 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TIMP4Q99727 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.36■□□□□ 0.53
TIMP4Q99727 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.36■□□□□ 0.53
TIMP4Q99727 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TIMP4Q99727 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TIMP4Q99727 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TIMP4Q99727 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TIMP4Q99727 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.36■□□□□ 0.53
TIMP4Q99727 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
TIMP4Q99727 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
TIMP4Q99727 AC026366.1-201ENST00000488803 879 ntBASIC18.36■□□□□ 0.53
TIMP4Q99727 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.36■□□□□ 0.53
TIMP4Q99727 C2orf69P4-201ENST00000565394 541 ntBASIC18.36■□□□□ 0.53
TIMP4Q99727 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.36■□□□□ 0.53
TIMP4Q99727 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TIMP4Q99727 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.36■□□□□ 0.53
TIMP4Q99727 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TIMP4Q99727 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.35■□□□□ 0.53
TIMP4Q99727 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.35■□□□□ 0.53
TIMP4Q99727 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.35■□□□□ 0.53
TIMP4Q99727 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.35■□□□□ 0.53
TIMP4Q99727 AP003097.1-201ENST00000530657 1135 ntBASIC18.35■□□□□ 0.53
TIMP4Q99727 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TIMP4Q99727 AL356652.1-201ENST00000615962 565 ntBASIC18.35■□□□□ 0.53
TIMP4Q99727 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TIMP4Q99727 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
TIMP4Q99727 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 AC092368.3-202ENST00000574180 1591 ntBASIC18.34■□□□□ 0.53
TIMP4Q99727 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.34■□□□□ 0.53
TIMP4Q99727 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.34■□□□□ 0.53
TIMP4Q99727 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.34■□□□□ 0.53
TIMP4Q99727 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.34■□□□□ 0.53
TIMP4Q99727 PNMA6B-201ENST00000538162 1200 ntBASIC18.34■□□□□ 0.53
TIMP4Q99727 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TIMP4Q99727 AC006058.3-201ENST00000606217 1069 ntBASIC18.34■□□□□ 0.53
TIMP4Q99727 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TIMP4Q99727 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.33■□□□□ 0.53
TIMP4Q99727 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TIMP4Q99727 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.53
TIMP4Q99727 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.33■□□□□ 0.53
TIMP4Q99727 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TIMP4Q99727 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TIMP4Q99727 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TIMP4Q99727 PRORSD1P-201ENST00000295112 541 ntBASIC18.33■□□□□ 0.52
TIMP4Q99727 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
TIMP4Q99727 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TIMP4Q99727 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TIMP4Q99727 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TIMP4Q99727 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.33■□□□□ 0.52
TIMP4Q99727 AC008687.6-201ENST00000596318 630 ntBASIC18.33■□□□□ 0.52
TIMP4Q99727 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.33■□□□□ 0.52
TIMP4Q99727 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.33■□□□□ 0.52
TIMP4Q99727 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TIMP4Q99727 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TIMP4Q99727 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TIMP4Q99727 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TIMP4Q99727 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms