Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC33.51■■■□□ 2.96
IFT140Q96RY7 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC33.51■■■□□ 2.96
IFT140Q96RY7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
IFT140Q96RY7 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC33.51■■■□□ 2.96
IFT140Q96RY7 AL691432.3-201ENST00000621860 400 ntBASIC33.51■■■□□ 2.96
IFT140Q96RY7 MIR2861-201ENST00000636310 90 ntBASIC33.51■■■□□ 2.96
IFT140Q96RY7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC33.51■■■□□ 2.96
IFT140Q96RY7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC33.51■■■□□ 2.96
IFT140Q96RY7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC33.51■■■□□ 2.96
IFT140Q96RY7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
IFT140Q96RY7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC33.5■■■□□ 2.95
IFT140Q96RY7 ANKRD20A18P-201ENST00000359341 492 ntBASIC33.5■■■□□ 2.95
IFT140Q96RY7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
IFT140Q96RY7 AC010653.2-201ENST00000623505 997 ntBASIC33.5■■■□□ 2.95
IFT140Q96RY7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
IFT140Q96RY7 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 AL671277.2-201ENST00000458060 996 ntBASIC33.5■■■□□ 2.95
IFT140Q96RY7 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC33.5■■■□□ 2.95
IFT140Q96RY7 AP000692.2-201ENST00000608391 879 ntBASIC33.5■■■□□ 2.95
IFT140Q96RY7 AC141257.4-201ENST00000634557 245 ntBASIC33.5■■■□□ 2.95
IFT140Q96RY7 AC136944.6-201ENST00000634818 245 ntBASIC33.5■■■□□ 2.95
IFT140Q96RY7 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
IFT140Q96RY7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC33.49■■■□□ 2.95
IFT140Q96RY7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
IFT140Q96RY7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
IFT140Q96RY7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC33.49■■■□□ 2.95
IFT140Q96RY7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
IFT140Q96RY7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC33.49■■■□□ 2.95
IFT140Q96RY7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
IFT140Q96RY7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC33.49■■■□□ 2.95
IFT140Q96RY7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC33.49■■■□□ 2.95
IFT140Q96RY7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC33.49■■■□□ 2.95
IFT140Q96RY7 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC33.49■■■□□ 2.95
IFT140Q96RY7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
IFT140Q96RY7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC33.48■■■□□ 2.95
IFT140Q96RY7 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC33.48■■■□□ 2.95
IFT140Q96RY7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
IFT140Q96RY7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC33.48■■■□□ 2.95
IFT140Q96RY7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
IFT140Q96RY7 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC33.48■■■□□ 2.95
IFT140Q96RY7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC33.48■■■□□ 2.95
IFT140Q96RY7 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC33.48■■■□□ 2.95
IFT140Q96RY7 AC116562.4-202ENST00000641738 218 ntBASIC33.48■■■□□ 2.95
IFT140Q96RY7 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC33.48■■■□□ 2.95
IFT140Q96RY7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
IFT140Q96RY7 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC33.47■■■□□ 2.95
IFT140Q96RY7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
IFT140Q96RY7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC33.47■■■□□ 2.95
IFT140Q96RY7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC33.47■■■□□ 2.95
IFT140Q96RY7 AC008622.2-201ENST00000617006 1229 ntBASIC33.47■■■□□ 2.95
IFT140Q96RY7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
IFT140Q96RY7 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC33.47■■■□□ 2.95
IFT140Q96RY7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
IFT140Q96RY7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC33.47■■■□□ 2.95
IFT140Q96RY7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
IFT140Q96RY7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
IFT140Q96RY7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
IFT140Q96RY7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 HOMER2P1-201ENST00000455653 964 ntBASIC33.46■■■□□ 2.95
IFT140Q96RY7 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 AC011484.1-201ENST00000377652 1995 ntBASIC33.46■■■□□ 2.95
IFT140Q96RY7 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
IFT140Q96RY7 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC33.46■■■□□ 2.95
IFT140Q96RY7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
IFT140Q96RY7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC33.45■■■□□ 2.95
IFT140Q96RY7 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC33.45■■■□□ 2.95
IFT140Q96RY7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
IFT140Q96RY7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC33.45■■■□□ 2.95
IFT140Q96RY7 AC011558.1-201ENST00000623459 338 ntBASIC33.45■■■□□ 2.95
IFT140Q96RY7 AC012313.10-201ENST00000623509 926 ntBASIC33.45■■■□□ 2.95
IFT140Q96RY7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC33.45■■■□□ 2.95
IFT140Q96RY7 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
IFT140Q96RY7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC33.45■■■□□ 2.95
IFT140Q96RY7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.94
IFT140Q96RY7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 AC007663.1-201ENST00000438948 1240 ntBASIC33.44■■■□□ 2.94
IFT140Q96RY7 CCR12P-201ENST00000446203 998 ntBASIC33.44■■■□□ 2.94
IFT140Q96RY7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 RCC2P6-201ENST00000526625 1557 ntBASIC33.44■■■□□ 2.94
IFT140Q96RY7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC33.44■■■□□ 2.94
IFT140Q96RY7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC33.44■■■□□ 2.94
IFT140Q96RY7 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC33.44■■■□□ 2.94
IFT140Q96RY7 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC33.44■■■□□ 2.94
IFT140Q96RY7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms