Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLIP3Q96DZ5 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 AC121338.2-201ENST00000622535 1744 ntBASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 C1QBPP2-201ENST00000528754 825 ntBASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLIP3Q96DZ5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 AC027702.1-201ENST00000563810 1770 ntBASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLIP3Q96DZ5 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 POM121L13P-201ENST00000422362 380 ntBASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLIP3Q96DZ5 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 AC069544.1-201ENST00000609399 999 ntBASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 AL359736.2-201ENST00000621992 437 ntBASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 AC006557.6-201ENST00000623071 864 ntBASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLIP3Q96DZ5 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms