Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
SMC1BQ8NDV3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SMC1BQ8NDV3 HIST1H2APS4-201ENST00000362070 348 ntBASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 AC141257.4-201ENST00000634557 245 ntBASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 AC136944.6-201ENST00000634818 245 ntBASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 ABBA01031674.1-201ENST00000635145 728 ntBASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SMC1BQ8NDV3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 AL445675.2-201ENST00000620291 557 ntBASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SMC1BQ8NDV3 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 AC011506.1-201ENST00000474329 610 ntBASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.87■■□□□ 1.41
SMC1BQ8NDV3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 KRT8P10-201ENST00000450021 1447 ntBASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 TSPY21P-201ENST00000433481 731 ntBASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 TSPY23P-201ENST00000440136 739 ntBASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 AL359075.1-203ENST00000462729 1002 ntBASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SMC1BQ8NDV3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 CCR12P-201ENST00000446203 998 ntBASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 CYGB-204ENST00000589342 815 ntTSL 3 BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC23.85■■□□□ 1.41
SMC1BQ8NDV3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 AC004870.1-201ENST00000315132 882 ntBASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 KRT17P6-201ENST00000453795 1220 ntBASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 VENTXP5-201ENST00000523979 775 ntBASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC23.84■■□□□ 1.41
SMC1BQ8NDV3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 ATP5G2P1-201ENST00000433580 426 ntBASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SMC1BQ8NDV3 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
SMC1BQ8NDV3 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms