Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS3Q8IXF0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS3Q8IXF0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS3Q8IXF0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS3Q8IXF0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.82■□□□□ 0.92
NPAS3Q8IXF0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.82■□□□□ 0.92
NPAS3Q8IXF0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NPAS3Q8IXF0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 REXO1L10P-201ENST00000615707 1290 ntBASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 AC121338.2-201ENST00000622535 1744 ntBASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 AC079598.2-202ENST00000546624 1451 ntBASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 AL024507.2-201ENST00000606070 2574 ntBASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NPAS3Q8IXF0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 HLA-G-202ENST00000376815 851 ntBASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 HLA-G-203ENST00000376818 1127 ntBASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 MIR6786-201ENST00000616843 113 ntBASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 AL049796.1-201ENST00000565336 1766 ntBASIC20.8■□□□□ 0.92
NPAS3Q8IXF0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 KRT8P9-201ENST00000558927 1449 ntBASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 AC145285.6-201ENST00000604632 637 ntBASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 AP000525.1-201ENST00000608286 694 ntBASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
NPAS3Q8IXF0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 AL445228.2-201ENST00000605589 952 ntBASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 FBXW4P1-201ENST00000426721 2239 ntBASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.78■□□□□ 0.92
NPAS3Q8IXF0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 UNC93B2-201ENST00000285383 730 ntBASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NPAS3Q8IXF0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.77■□□□□ 0.91
NPAS3Q8IXF0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPAS3Q8IXF0 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
NPAS3Q8IXF0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
NPAS3Q8IXF0 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms