Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM40Q6P9F5 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 MIR4758-201ENST00000577688 71 ntBASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 AC092118.2-201ENST00000613495 667 ntBASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM40Q6P9F5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 AL391422.3-201ENST00000603791 2761 ntBASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 AIRN-201ENST00000601203 4374 ntBASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 C2orf69P4-201ENST00000565394 541 ntBASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
TRIM40Q6P9F5 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 AC104771.1-201ENST00000603335 964 ntBASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM40Q6P9F5 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 SMG8-203ENST00000578922 2178 ntBASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM40Q6P9F5 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM40Q6P9F5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms