Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX3P41225 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SOX3P41225 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX3P41225 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 PGM5P4-201ENST00000421970 445 ntBASIC18.81■□□□□ 0.6
SOX3P41225 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX3P41225 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX3P41225 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX3P41225 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX3P41225 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.81■□□□□ 0.6
SOX3P41225 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.81■□□□□ 0.6
SOX3P41225 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SOX3P41225 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SOX3P41225 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SOX3P41225 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.8■□□□□ 0.6
SOX3P41225 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
SOX3P41225 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.8■□□□□ 0.6
SOX3P41225 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.8■□□□□ 0.6
SOX3P41225 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.8■□□□□ 0.6
SOX3P41225 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.8■□□□□ 0.6
SOX3P41225 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.8■□□□□ 0.6
SOX3P41225 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SOX3P41225 MIR4651-201ENST00000582622 73 ntBASIC18.8■□□□□ 0.6
SOX3P41225 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SOX3P41225 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SOX3P41225 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
SOX3P41225 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.79■□□□□ 0.6
SOX3P41225 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.79■□□□□ 0.6
SOX3P41225 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.79■□□□□ 0.6
SOX3P41225 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.79■□□□□ 0.6
SOX3P41225 AL356652.1-201ENST00000615962 565 ntBASIC18.79■□□□□ 0.6
SOX3P41225 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
SOX3P41225 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.79■□□□□ 0.6
SOX3P41225 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.79■□□□□ 0.6
SOX3P41225 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SOX3P41225 PLK5-205ENST00000642079 1969 ntBASIC18.79■□□□□ 0.6
SOX3P41225 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SOX3P41225 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SOX3P41225 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SOX3P41225 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SOX3P41225 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 AC027702.1-201ENST00000563810 1770 ntBASIC18.78■□□□□ 0.6
SOX3P41225 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SOX3P41225 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SOX3P41225 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX3P41225 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX3P41225 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 ABHD17AP1-201ENST00000358206 933 ntBASIC18.78■□□□□ 0.6
SOX3P41225 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.78■□□□□ 0.6
SOX3P41225 TSPY20P-201ENST00000450910 630 ntBASIC18.78■□□□□ 0.6
SOX3P41225 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.78■□□□□ 0.6
SOX3P41225 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.78■□□□□ 0.6
SOX3P41225 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX3P41225 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX3P41225 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.77■□□□□ 0.6
SOX3P41225 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX3P41225 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX3P41225 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms