Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL2A1P02458 AL355355.2-201ENST00000442321 338 ntBASIC23.56■■□□□ 1.36
COL2A1P02458 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC23.56■■□□□ 1.36
COL2A1P02458 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC23.56■■□□□ 1.36
COL2A1P02458 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL2A1P02458 AC116351.2-201ENST00000606540 1585 ntBASIC23.56■■□□□ 1.36
COL2A1P02458 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.56■■□□□ 1.36
COL2A1P02458 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL2A1P02458 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
COL2A1P02458 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL2A1P02458 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL2A1P02458 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL2A1P02458 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.56■■□□□ 1.36
COL2A1P02458 KSR1P1-201ENST00000446298 240 ntBASIC23.56■■□□□ 1.36
COL2A1P02458 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC23.56■■□□□ 1.36
COL2A1P02458 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
COL2A1P02458 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC23.56■■□□□ 1.36
COL2A1P02458 REXO1L10P-201ENST00000615707 1290 ntBASIC23.56■■□□□ 1.36
COL2A1P02458 AF106564.1-201ENST00000607058 2553 ntBASIC23.55■■□□□ 1.36
COL2A1P02458 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.55■■□□□ 1.36
COL2A1P02458 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.55■■□□□ 1.36
COL2A1P02458 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.55■■□□□ 1.36
COL2A1P02458 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
COL2A1P02458 DPP3P2-201ENST00000416030 1696 ntBASIC23.55■■□□□ 1.36
COL2A1P02458 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.55■■□□□ 1.36
COL2A1P02458 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL2A1P02458 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL2A1P02458 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
COL2A1P02458 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC23.55■■□□□ 1.36
COL2A1P02458 YBX1P10-201ENST00000444752 975 ntBASIC23.55■■□□□ 1.36
COL2A1P02458 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC23.55■■□□□ 1.36
COL2A1P02458 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC23.55■■□□□ 1.36
COL2A1P02458 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC23.55■■□□□ 1.36
COL2A1P02458 AC133561.5-201ENST00000635547 218 ntBASIC23.55■■□□□ 1.36
COL2A1P02458 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL2A1P02458 AC007225.1-201ENST00000566331 1836 ntBASIC23.55■■□□□ 1.36
COL2A1P02458 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
COL2A1P02458 FP700111.2-201ENST00000619190 1892 ntBASIC23.54■■□□□ 1.36
COL2A1P02458 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC23.54■■□□□ 1.36
COL2A1P02458 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 RBM17P1-201ENST00000453646 1190 ntBASIC23.54■■□□□ 1.36
COL2A1P02458 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC23.54■■□□□ 1.36
COL2A1P02458 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL2A1P02458 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL2A1P02458 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
COL2A1P02458 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL2A1P02458 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.53■■□□□ 1.36
COL2A1P02458 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL2A1P02458 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL2A1P02458 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL2A1P02458 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC23.53■■□□□ 1.36
COL2A1P02458 AC116562.2-201ENST00000507042 360 ntBASIC23.53■■□□□ 1.36
COL2A1P02458 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.53■■□□□ 1.36
COL2A1P02458 KRT16P1-201ENST00000399124 1418 ntBASIC23.53■■□□□ 1.36
COL2A1P02458 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL2A1P02458 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL2A1P02458 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
COL2A1P02458 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC23.52■■□□□ 1.36
COL2A1P02458 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL2A1P02458 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL2A1P02458 PPOX-219ENST00000544598 813 ntTSL 2 BASIC23.52■■□□□ 1.36
COL2A1P02458 AC026271.3-201ENST00000571884 352 ntBASIC23.52■■□□□ 1.36
COL2A1P02458 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC23.52■■□□□ 1.36
COL2A1P02458 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL2A1P02458 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
COL2A1P02458 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC23.51■■□□□ 1.35
COL2A1P02458 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC23.51■■□□□ 1.35
COL2A1P02458 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL2A1P02458 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL2A1P02458 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC23.51■■□□□ 1.35
COL2A1P02458 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL2A1P02458 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL2A1P02458 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL2A1P02458 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL2A1P02458 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL2A1P02458 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
COL2A1P02458 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC23.5■■□□□ 1.35
COL2A1P02458 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC23.5■■□□□ 1.35
COL2A1P02458 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL2A1P02458 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.5■■□□□ 1.35
COL2A1P02458 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL2A1P02458 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
COL2A1P02458 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
COL2A1P02458 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC23.5■■□□□ 1.35
COL2A1P02458 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms