Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.62■□□□□ 0.73
TNFP01375 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.62■□□□□ 0.73
TNFP01375 AC233702.5-201ENST00000584107 538 ntBASIC19.62■□□□□ 0.73
TNFP01375 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.62■□□□□ 0.73
TNFP01375 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.62■□□□□ 0.73
TNFP01375 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TNFP01375 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
TNFP01375 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
TNFP01375 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFP01375 DPP3P2-201ENST00000416030 1696 ntBASIC19.62■□□□□ 0.73
TNFP01375 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFP01375 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TNFP01375 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 NBPF21P-201ENST00000425093 1451 ntBASIC19.61■□□□□ 0.73
TNFP01375 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.61■□□□□ 0.73
TNFP01375 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.61■□□□□ 0.73
TNFP01375 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.61■□□□□ 0.73
TNFP01375 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 RARRES2P10-201ENST00000564312 460 ntBASIC19.61■□□□□ 0.73
TNFP01375 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.61■□□□□ 0.73
TNFP01375 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TNFP01375 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.61■□□□□ 0.73
TNFP01375 AC092720.2-201ENST00000602388 1665 ntBASIC19.61■□□□□ 0.73
TNFP01375 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TNFP01375 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFP01375 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TNFP01375 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TNFP01375 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.6■□□□□ 0.73
TNFP01375 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TNFP01375 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.6■□□□□ 0.73
TNFP01375 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TNFP01375 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.6■□□□□ 0.73
TNFP01375 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.6■□□□□ 0.73
TNFP01375 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.6■□□□□ 0.73
TNFP01375 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TNFP01375 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TNFP01375 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.6■□□□□ 0.73
TNFP01375 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.6■□□□□ 0.73
TNFP01375 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.59■□□□□ 0.73
TNFP01375 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.59■□□□□ 0.73
TNFP01375 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TNFP01375 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.59■□□□□ 0.73
TNFP01375 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TNFP01375 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TNFP01375 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.59■□□□□ 0.73
TNFP01375 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.59■□□□□ 0.73
TNFP01375 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.59■□□□□ 0.73
TNFP01375 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.59■□□□□ 0.73
TNFP01375 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.59■□□□□ 0.73
TNFP01375 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.59■□□□□ 0.73
TNFP01375 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TNFP01375 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.58■□□□□ 0.73
TNFP01375 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TNFP01375 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TNFP01375 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TNFP01375 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
TNFP01375 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
TNFP01375 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
TNFP01375 KRT16P5-201ENST00000455284 522 ntBASIC19.58■□□□□ 0.72
TNFP01375 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.58■□□□□ 0.72
TNFP01375 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.58■□□□□ 0.72
TNFP01375 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TNFP01375 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.58■□□□□ 0.72
TNFP01375 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
TNFP01375 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFP01375 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.57■□□□□ 0.72
TNFP01375 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFP01375 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.57■□□□□ 0.72
TNFP01375 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
TNFP01375 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TNFP01375 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms