Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 AC105036.2-201ENST00000569468 176 ntBASIC19.17■□□□□ 0.66
SEMA3DO95025 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.17■□□□□ 0.66
SEMA3DO95025 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SEMA3DO95025 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SEMA3DO95025 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
SEMA3DO95025 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SEMA3DO95025 MKRN4P-201ENST00000444706 1521 ntBASIC19.16■□□□□ 0.66
SEMA3DO95025 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.16■□□□□ 0.66
SEMA3DO95025 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.16■□□□□ 0.66
SEMA3DO95025 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEMA3DO95025 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEMA3DO95025 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SEMA3DO95025 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SEMA3DO95025 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.16■□□□□ 0.66
SEMA3DO95025 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.16■□□□□ 0.66
SEMA3DO95025 C2orf69P4-201ENST00000565394 541 ntBASIC19.16■□□□□ 0.66
SEMA3DO95025 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.16■□□□□ 0.66
SEMA3DO95025 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.16■□□□□ 0.66
SEMA3DO95025 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEMA3DO95025 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SEMA3DO95025 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
SEMA3DO95025 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SEMA3DO95025 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SEMA3DO95025 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SEMA3DO95025 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEMA3DO95025 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SEMA3DO95025 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEMA3DO95025 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SEMA3DO95025 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
SEMA3DO95025 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SEMA3DO95025 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SEMA3DO95025 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SEMA3DO95025 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.15■□□□□ 0.66
SEMA3DO95025 LSM12P1-201ENST00000411836 588 ntBASIC19.15■□□□□ 0.66
SEMA3DO95025 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.15■□□□□ 0.66
SEMA3DO95025 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.15■□□□□ 0.66
SEMA3DO95025 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.15■□□□□ 0.66
SEMA3DO95025 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.15■□□□□ 0.66
SEMA3DO95025 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.15■□□□□ 0.66
SEMA3DO95025 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.15■□□□□ 0.66
SEMA3DO95025 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SEMA3DO95025 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SEMA3DO95025 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SEMA3DO95025 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SEMA3DO95025 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SEMA3DO95025 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
SEMA3DO95025 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SEMA3DO95025 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SEMA3DO95025 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.14■□□□□ 0.65
SEMA3DO95025 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.14■□□□□ 0.65
SEMA3DO95025 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.14■□□□□ 0.65
SEMA3DO95025 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.14■□□□□ 0.65
SEMA3DO95025 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.14■□□□□ 0.65
SEMA3DO95025 AC006970.2-201ENST00000450065 779 ntBASIC19.14■□□□□ 0.65
SEMA3DO95025 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.14■□□□□ 0.65
SEMA3DO95025 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.14■□□□□ 0.65
SEMA3DO95025 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.14■□□□□ 0.65
SEMA3DO95025 AL031963.3-201ENST00000606441 850 ntBASIC19.14■□□□□ 0.65
SEMA3DO95025 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
SEMA3DO95025 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SEMA3DO95025 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEMA3DO95025 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEMA3DO95025 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
SEMA3DO95025 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEMA3DO95025 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEMA3DO95025 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SEMA3DO95025 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEMA3DO95025 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SEMA3DO95025 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.13■□□□□ 0.65
SEMA3DO95025 AL121832.2-201ENST00000610979 668 ntBASIC19.13■□□□□ 0.65
SEMA3DO95025 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.13■□□□□ 0.65
SEMA3DO95025 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEMA3DO95025 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SEMA3DO95025 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SEMA3DO95025 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.13■□□□□ 0.65
SEMA3DO95025 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SEMA3DO95025 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEMA3DO95025 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEMA3DO95025 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SEMA3DO95025 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.13■□□□□ 0.65
SEMA3DO95025 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SEMA3DO95025 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SEMA3DO95025 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.12■□□□□ 0.65
SEMA3DO95025 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SEMA3DO95025 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SEMA3DO95025 KRT8P17-201ENST00000453110 1448 ntBASIC19.12■□□□□ 0.65
SEMA3DO95025 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SEMA3DO95025 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.12■□□□□ 0.65
SEMA3DO95025 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.12■□□□□ 0.65
SEMA3DO95025 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SEMA3DO95025 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.12■□□□□ 0.65
SEMA3DO95025 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.12■□□□□ 0.65
SEMA3DO95025 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.12■□□□□ 0.65
SEMA3DO95025 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms